| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1700 |
|---|
| Symbol | |
|---|
| ID | 8419531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 1957066 |
|---|
| End bp | 1957791 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645038274 |
|---|
| Product | pyridoxine 5'-phosphate synthase |
|---|
| Protein accession | YP_003198562 |
|---|
| Protein GI | 258405820 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0854] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00559] pyridoxine 5'-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.235508 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0255985 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAAAC TCGTTGTCAA CGTCGATCAT ATAGCCACCC TGCGCCAGGC CCGTCTCGGT
ATCGAACCGG ACCCGGTTAC AGCCGCCCAT ATGGCCGAAC TCGCCGGGGC AGAGGGAATC
ATCGTCCATT TGCGCGAAGA CCGGCGGCAT ATCCAGGACC GCGATGTGGC TCTGTTGTCC
CAGACGGTCA AGACCAATCT CCATCTGGAG ATGGCCGCGA CCCCGGAAAT GCAGAAGATC
GCCCTGAATA CCGCCCCGCA CATGGTCTGC CTGGTCCCGG AAAAGCGCCA GGAACTTACC
ACTGAAGGCG GTCTCGATCT CCGGGGGCGG GAGACCGAAT TGCGGGACTA CCTGGCCCCC
ATCCACGAAC GCGAGATCCT CTCCAGCCTT TTTATCGACG CCGAACCCGA ACAAATTAAG
GCCGCCGCTG CGATCCAGGC GCCCTATGTC GAAATCCACA CCGGGCATTT TGCCGACGCC
ACGAGCAGGA CCGCGCAACA GCAGGAATTG ACCCGGCTGC TCGAAGGCAT CCGCCAAGCC
CAGGATCTCG GCTTGAAAGT CAATCTGGGC CACGGCCTGA ATTACACGAA TATTTATGGG
TTTGCCACTG TCCCGGGAAT TCACGAATTT TCCATAGGGC ACAGCATCAT CGCCCGGGCG
GCATTGAGCG GATTGGACCG GGCAGTCCGG GATATGGTCT CCATTATCAA GACCTTTGCC
CCTTAA
|
|---|
| Protein sequence | MPKLVVNVDH IATLRQARLG IEPDPVTAAH MAELAGAEGI IVHLREDRRH IQDRDVALLS
QTVKTNLHLE MAATPEMQKI ALNTAPHMVC LVPEKRQELT TEGGLDLRGR ETELRDYLAP
IHEREILSSL FIDAEPEQIK AAAAIQAPYV EIHTGHFADA TSRTAQQQEL TRLLEGIRQA
QDLGLKVNLG HGLNYTNIYG FATVPGIHEF SIGHSIIARA ALSGLDRAVR DMVSIIKTFA
P
|
|---|
| |