| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1693 |
|---|
| Symbol | |
|---|
| ID | 8419524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1948622 |
|---|
| End bp | 1949959 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645038267 |
|---|
| Product | nucleotide sugar dehydrogenase |
|---|
| Protein accession | YP_003198555 |
|---|
| Protein GI | 258405813 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1004] Predicted UDP-glucose 6-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03026] nucleotide sugar dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.110562 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00856066 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATATAT GTATTGTCGG AACAGGGTAT GTCGGGTTGG TTACCGCGGC CTGTTTCGCC
GAGATGGGCA ACCATGTGAC CTGCGTGGAT ATCAACGCCG AGGTCGTCTC CAACCTGCGC
CAGGGGCAGG TGCATATCTA CGAACCCGGT CTGGAAGAGA TGGTCACCCG GGGGACGGCT
GAAGGGCGGT TGCAGTTTAC CACCGAACTG TCTGAAGGGC TTCAGGACGC GCTGTTCGTC
TTTAATTGCG TCGGCACGCC GCCCCGCGAG GACGGCTCCT GCGATTTGGG CTTCGTGCAC
CAGGTGGCCC GGGAAGTCGG CCAGCTCATG GACGGCTACA AGATCGTGGT CAACAAATCC
ACAGTCCCGG TGGGCACAGC GGACACGGTC CGGCAGCTCA TCCAGGAGGC ATTGGACCAG
CGTGGCGTCG ATCACGAATT CGACGTGGTT TCCAACCCGG AATTTTTGAA GGAAGGCGGG
GCAGTCAACG ACTTCATGAA GCCCGACCGC GTCGTGGTCG GAACGGACAA CGTCCGCACC
GCCGAACTGC TCAAGGCGTT GTACGGCCCG TTCGCCCGGA GCCGGGACAA GATGATGGTT
ATGAGCGTGC GTAGCGCGGA GATGACCAAA TACGCCGCGA ACTGCATGCT GGCGACCAAG
ATTTCGTTTA TCAACGAAGT GGCCAATATC TGTGAAGAAG TCGGCGCAGA CGTCCGTGAG
GTGCGCATGG GCATTGGGGC CGACCACCGT ATCGGCTACC AGTTTATCTA CCCCGGGGTC
GGCTACGGCG GGTCCTGTTT CCCCAAAGAC GTCAAAGCGT TGATCAACAC CGCCAAGGAA
AGCGCCTATA CGCCGCAACT GCTTGAAGCC GTGGATGAGG TCAACGATCG CCAAAAGCAG
GTGTTGGCCA GGAAAATCCT CAGCTATTTC GATCCACAAG GTGGAGTCGC CGGCAAGACC
CTGGCTTTGT GGGGCCTGGC TTTCAAGGCC AATACCGACG ATATGCGCGA GGCCTCTTCA
CTCGAAGTCA TCCGGGAACT CACGGAGCAG GGGATGCGCA TCCGCGCCTT TGATCCGGTG
GCCGGAGAGA AGGCCAAGGA ATTGCTTGCG GACAACGATC TGGTGGAGGT GGTCGACGAC
CAGTACGCGG TCCTCGACGA CGCGCAGGCC TTGGCAGTGG TCACAGAATG GAATCAGTTC
CGCAATCCTG ATTTCGAGGG TATCAAAGCC AAGTTGACCG CTCCGGTGCT GTTCGACGGA
CGGAATCTGT ATCCCCCGGA ACTGCTCGGC CAAAGCGGTT TTGCCTATTT TTGTATCGGA
CGCCAGAGCG CTTCGTAG
|
|---|
| Protein sequence | MNICIVGTGY VGLVTAACFA EMGNHVTCVD INAEVVSNLR QGQVHIYEPG LEEMVTRGTA
EGRLQFTTEL SEGLQDALFV FNCVGTPPRE DGSCDLGFVH QVAREVGQLM DGYKIVVNKS
TVPVGTADTV RQLIQEALDQ RGVDHEFDVV SNPEFLKEGG AVNDFMKPDR VVVGTDNVRT
AELLKALYGP FARSRDKMMV MSVRSAEMTK YAANCMLATK ISFINEVANI CEEVGADVRE
VRMGIGADHR IGYQFIYPGV GYGGSCFPKD VKALINTAKE SAYTPQLLEA VDEVNDRQKQ
VLARKILSYF DPQGGVAGKT LALWGLAFKA NTDDMREASS LEVIRELTEQ GMRIRAFDPV
AGEKAKELLA DNDLVEVVDD QYAVLDDAQA LAVVTEWNQF RNPDFEGIKA KLTAPVLFDG
RNLYPPELLG QSGFAYFCIG RQSAS
|
|---|
| |