| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1528 |
|---|
| Symbol | |
|---|
| ID | 8419357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1771136 |
|---|
| End bp | 1772101 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 645038102 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_003198392 |
|---|
| Protein GI | 258405650 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTGA GTGACCTTAT TGCACGTTAT CCCGATCTCA TGGCCCGATG CCTCAATCTT
TCCGGAACGA CCATCCTCAT TACAATAGAT GAAGAATACA AGATCACCTT CTGTACAGAC
TCTCTTGTTC AGCAGCTGCA TCTTCTCCAC AAGCCCACGG GAACACATCT TGGATCTGTC
TTGTGTCCCC TGGAAGAGGC AGAATTTTTT CTCACCATCT CTAACTCGTC GAAAAAGTTT
CTTCCCCAGC TATTCAGGCT CTGCGAATCG AACGACCTCT ACCGTTGCTA CACATTCCCG
ATTGATACGG GCTACCTTGT CTGGGGCGAC AAGATGGGAA GCACGGAAAA TGAAATTCTG
GAGAGCATGT CCCACCTGAA CAACGAACTT TCAGACATGA GCCGGCAGCT CAGCAAGGCC
AACCGGGAGC TCAACAAGAA AAACCAAGAG CTGGAGTGGG CCAACGAGAA GATCACCCGA
ATTTCGCGAA TGGATTACCT TACTGGCTTG TCCAACAGAA GCTATTTCCA GGAACGCTTG
AAAGAGATAT TCGCTTTAAC CAAACGGCAC GGGCTAGAAT TTACCATCCT TCTTGCCGAC
CTGGATCACT TCAAGCGAAT CAACGACACC TACGGCCACG ACATGGGGGA CAAAGTGCTA
CAAGCCTTCG GAACCCTCCT TGCCAATGAA TGCCGCACAG AAGATCTGCC TGCCAGATAC
GGAGGGGAGG AGTTTATACT TGTGTTTCCC AAGACACATG CGTCCGGGGT TATAACTTTT
TATGAACGTA TTCGGAGAGA ACTCATCCAT AGCGACCTCC TTCCCGACCC GGACTTTGTC
ACTTTCAGCG CCGGAATAAC CGAATATGAG GAAGGGGGCA CCGAAATTTC GCTACTTAAG
AAAGCGGACG ACGCATTATA TGAGGCAAAG AAGAACGGAC GGGACCGTTA CGTCATATCT
TCGTGA
|
|---|
| Protein sequence | MSVSDLIARY PDLMARCLNL SGTTILITID EEYKITFCTD SLVQQLHLLH KPTGTHLGSV
LCPLEEAEFF LTISNSSKKF LPQLFRLCES NDLYRCYTFP IDTGYLVWGD KMGSTENEIL
ESMSHLNNEL SDMSRQLSKA NRELNKKNQE LEWANEKITR ISRMDYLTGL SNRSYFQERL
KEIFALTKRH GLEFTILLAD LDHFKRINDT YGHDMGDKVL QAFGTLLANE CRTEDLPARY
GGEEFILVFP KTHASGVITF YERIRRELIH SDLLPDPDFV TFSAGITEYE EGGTEISLLK
KADDALYEAK KNGRDRYVIS S
|
|---|
| |