| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1396 |
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| Symbol | |
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| ID | 8419225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1627732 |
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| End bp | 1631211 |
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| Gene Length | 3480 bp |
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| Protein Length | 1159 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645037971 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_003198261 |
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| Protein GI | 258405519 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.253021 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.727837 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGATT TTACCCACCT GCATTGCCAT ACCGAATACA GCCTGCTCGA CGGGGCCATC
CGTATCGGCG ATCTCTGCCA ACAGGCGGTG GACTTCGGAT TCTCCAGCGT TGCCATCAGC
GACCACGGCA ACCTCTTCGG AGCTCTGGAT TTTTATCTCA CGGCCAAAAA ATTCGGGGTC
AAGCCGATTA TCGGTTGCGA GGTCTACGTG GCCCCGGGAG ACCGGCGTAC CAAACACACG
GACAAGGACA TTCGCTCCGG GTACCATCTG GTTTTGCTGG CCCAGAATCT GACCGGCTAC
TACAATCTCG TGCGTCTGGT CAGCCGGGGG TGGCTGGAGG GATTCCATTA CAAGCCCCGG
GTGGACAAGG AACTTTTGTC GCAGTGGAAC GAAGGGTTGA TCGCCCTGTC CGCTTGTCTC
AAGGGAGAAG TCCCGTATGG TCTGCGCCAC GAGGGCATGA GCCGCGGCAA GGCCCTGGCG
GAGGAGTACA GTGCCCTGTT TCCGGGGCGG TTCTATCTTG AACTGCAGGC CAATGGCATT
CCGGAACAGG TGACGCTCAA TGAGCAGCTC CTGGAGTTGG CCGAGACGAC CAAACTGCCG
CTGGTGGCCA CCAATGACTG CCACTATCTG AGCTACAACG ATGTCGAGGC CCACGACATC
CTGCTGTGCA TCCAGACCAA CGCCCAGTAC TATGCCAAGG ATCGGATGCG CTTTGATACC
CAGGAGTTGT ATTATCGGCC TCCGGAGGAA ATGGAGCAGG CCTTTGCCCA TTGTCCCCAA
GCTCTGGAGA ATGTCGGTGC GATTGCCCGC AACTGCAATG TGGAACTCGA CCTGGGGCAG
AACTATTTTC CGGTCTACGA TGTGCCGCAA GGGCGGACTC TGGAAGAGGA ATTTATACGT
CTCGTCCGGG AAGGATTACG GACTCGCCTG GCCAAATTGC CGTACACAGT CGACGAAGAG
GTCTATTGGC AGCGGCTGGA CACTGAACTC GACGTCATCT GCGCCAAAGG ATTCCCGGCC
TATTTCCTGA TTGTGCAGGA TTTTATCAAT TGGGCCAAAG AGCAGGGCAT CCCGGTTGGT
CCCGGCCGGG GGTCGGCCGC CGGGAGTCTG GTGGCCTATT GTTTGGGGAT CACCAACCTG
GATCCTTTGC GGTACAATCT CCTGTTCGAG CGGTTCCTCA ATGTGGAGCG CGCGAGCATG
CCGGATATCG ATGTCGACTT CTGCTACAAC CGCCGTGAAG AAGTCATTCG GTATGTCACT
GCGAAATACG GTAAAGAGAG TGTGGCGCAG ATCACGACCT TCGGGACGAT GAAGGCCAAG
GCGGTGGTTC GTGATGTGGG CCGGGCTCTG GGACTCAGTT TTGCCGAAAC GGACAAAATC
GCCAAGCTGG TCCCAGACGA CCTGAAGATG ACCATCGACA AGGCCTTGGA ACAGGAACCG
GACCTCGCGG CCCTGGCTGA AAACGACGAG ACCGTGGCCA AACTCATCGA CGTCTCGCGG
CGCCTGGAGG GGCTTGCCCG GCACGCTTCG ACCCATGCCG CCGGAATCGT TATTTCTGAC
AGCCACCCCC TGGAAGACCA TTTGCCCCTG TACCTCGGGA AAAAGGGCGA AGTGGTGACC
CAGTTCGACA TGAAAAAGGT CGAAAAAGTC GGTCTGATCA AGTTTGATTT TTTGGGGTTG
AAGACCCTGA CCGTGATCGC TGACACGCTC CATCTCGCGC AGCAGGCGGG AAAATCCGTT
CCGGACATTG ACACGTTGCC TTTGGAGGAT GAGGCCACCT TTGCGCTGTT GTGCCGAACG
GAGACCGACG GGGTCTTTCA ACTGGAAAGC TCCGGGATGC GCAATGTGAT CAAGGACCTG
CAACCGACGT CCTTTGAGGA TATCATTGCC TTGTTGGCCC TGTACCGGCC TGGACCGCTG
GAAAGCGGGA TGGTCACCGA TTTCATTCGC CGCAAGCACG GCGAAATCCC GGTCGAGTAT
CCCCATCCGC TTCTGGAGCC CATTCTGGAA GCGACGTACG GGGTTATCCT CTACCAGGAA
CAGGTCATGC GCATCGCCTC GGACATGGCC AATTATTCCC TGGGCGACGG GGATATCCTG
CGCCGGGCCA TGGGGAAAAA GGATCCCTCG GTCATGGCCG AGCAGCGGAC CAAGTTCGTC
AACGGGGCCA AGGAAAACGA GATCGACGAG GCGACGGCGA CCTATATTTT CGATCTCATG
GAGAAATTCG CCGGCTACGG CTTCAATAAA TCGCACTCGG CCGCCTATGC TCTGGTTTCC
TACCAGACCG CCTACCTCAA GGCCCACTAT CCCGTAGAGT TCATGGCCGC GCTGATCACC
TCGGAGGTGA GCAACACCGA CAAGGTCATT GCCCACATCA ACGCCTGCCG GGAAATGGGC
ATTGAAGTGC TGCCCCCGGA TGTGAATCAC AGTGAGCGGC ATTTCACGGT CGAAAACGAG
AAGCTCCGTT TCGGCCTCTC CGGGGTCAAG AATGTCGGCG GTGGGGCCAT CGAGGCTCTT
GTGGCCGAGC GCCGCCGTAA CGGTCCCTAC GCAAGTCTGC TCGATTTCTG TAAACGCGTC
GGCTCGCGCA AGGTCACCAA ACGGGTCCTG GAAAGTCTGA TCAAAAGCGG GGCAATGGAC
AGCCTCGGAT GCAGCCGGGC TTCGCTTCTA GCGGCATTGG ACAAGGTGGT TTCTACGGCC
CAGCGTCAGA GTCGGGATAA ATCGCGCGGC CAATTGTCGC TGATGGCCAT GATGGGCGAA
GAGGACAGTT GCGTGCTCAG CGGCATCGGG ATGGATATCG AGGAGGCCCA GGTCGAGGAA
TGGGACGACG AAAAGCGGCT GCAATATGAA AAGGAAGCCC TCGGTTTTTT TCTCAGCGGC
CACCCCTTGC TGCGTTTCCG GGAAGAACTC AAGCGGCAAC GGTTGCTGAG TCTGCAAGAC
TGCGGCGAGC TTGGTGGCGA CACCGAGGTG CGCACAGCAG TGCTGGTGAC CGGGGTCAAG
GAGCACGTGA CCAAAAAGGG CGGACGGATG GCGTTTTGTC AGATCGAAGA CCTGACCGGG
ACCGGGGAGA TGACCATGTT TCCCGAGACC TATGCCAAGG TCCGCAACGG GCTCGACCTG
GAACAGCCTT TGGTGGTCAC GGCCAAGATC AGTTCCTACG AAGGCGGCGG CAACGGCGAT
GAAGGGGCCA AACAGATCAA ACTTTTGGCC CAGGAGGTCG GCCTTTTGAA CGACCAGGTC
GGACGAGGGG ACGAACCGGT CCGCGTGGAT ATCGAGGCCG CAGCCCTGCA AGGCCAATCG
GCCCAGGAAC TCAAACAGAT CATCGGCCGT TATCCGGGGC GGGCTCCTGT CCACTTGGGG
GTCTGTCTGG AACGCGCCGA TTGTGTTTTG CAATTGGGGC CCAATTACCG AGTCGCCGCC
AGCCCTGATT TTTGGCGTGA AATCCGCCGC TGGCAAAGCG CTCATCGTCC GGCATCCTAG
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| Protein sequence | MTDFTHLHCH TEYSLLDGAI RIGDLCQQAV DFGFSSVAIS DHGNLFGALD FYLTAKKFGV
KPIIGCEVYV APGDRRTKHT DKDIRSGYHL VLLAQNLTGY YNLVRLVSRG WLEGFHYKPR
VDKELLSQWN EGLIALSACL KGEVPYGLRH EGMSRGKALA EEYSALFPGR FYLELQANGI
PEQVTLNEQL LELAETTKLP LVATNDCHYL SYNDVEAHDI LLCIQTNAQY YAKDRMRFDT
QELYYRPPEE MEQAFAHCPQ ALENVGAIAR NCNVELDLGQ NYFPVYDVPQ GRTLEEEFIR
LVREGLRTRL AKLPYTVDEE VYWQRLDTEL DVICAKGFPA YFLIVQDFIN WAKEQGIPVG
PGRGSAAGSL VAYCLGITNL DPLRYNLLFE RFLNVERASM PDIDVDFCYN RREEVIRYVT
AKYGKESVAQ ITTFGTMKAK AVVRDVGRAL GLSFAETDKI AKLVPDDLKM TIDKALEQEP
DLAALAENDE TVAKLIDVSR RLEGLARHAS THAAGIVISD SHPLEDHLPL YLGKKGEVVT
QFDMKKVEKV GLIKFDFLGL KTLTVIADTL HLAQQAGKSV PDIDTLPLED EATFALLCRT
ETDGVFQLES SGMRNVIKDL QPTSFEDIIA LLALYRPGPL ESGMVTDFIR RKHGEIPVEY
PHPLLEPILE ATYGVILYQE QVMRIASDMA NYSLGDGDIL RRAMGKKDPS VMAEQRTKFV
NGAKENEIDE ATATYIFDLM EKFAGYGFNK SHSAAYALVS YQTAYLKAHY PVEFMAALIT
SEVSNTDKVI AHINACREMG IEVLPPDVNH SERHFTVENE KLRFGLSGVK NVGGGAIEAL
VAERRRNGPY ASLLDFCKRV GSRKVTKRVL ESLIKSGAMD SLGCSRASLL AALDKVVSTA
QRQSRDKSRG QLSLMAMMGE EDSCVLSGIG MDIEEAQVEE WDDEKRLQYE KEALGFFLSG
HPLLRFREEL KRQRLLSLQD CGELGGDTEV RTAVLVTGVK EHVTKKGGRM AFCQIEDLTG
TGEMTMFPET YAKVRNGLDL EQPLVVTAKI SSYEGGGNGD EGAKQIKLLA QEVGLLNDQV
GRGDEPVRVD IEAAALQGQS AQELKQIIGR YPGRAPVHLG VCLERADCVL QLGPNYRVAA
SPDFWREIRR WQSAHRPAS
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