| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1303 |
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| Symbol | |
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| ID | 8419132 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1524810 |
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| End bp | 1527155 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 645037879 |
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| Product | (NiFe) hydrogenase maturation protein HypF |
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| Protein accession | YP_003198169 |
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| Protein GI | 258405427 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0068] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.083014 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0845078 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACCAA CACCCTGTTC TCGCCAACGA TTCGTGGTCA ACGGCCGTGT CCAGGGGGTC
GGATTCCGGC CCTTTGTCTA CCGTTTGGCC CTGGACCACG CCCTGAGCGG ATTTGTCCAG
AACACCTCCG AAGGCGTGGT CATCGAAGTC CAGGGGCTCG AGGACGGAAT AGGCCGTTTT
GCCGTCGATC TCGAAAAACA GCTTCCCCCG CTGGCCCAAT TGACCTCGAT CCAGACGGAA
ACCCTTTCGC CGCATGACAC CCCTGAAACG AGCTTTCATA TTCTTTCCAG CTCCGGCGGC
GAGGGCCATG AGGTCCTGAT CAGTCCGGAT GTGGCTACCT GTCCGGAGTG TTTGGCCGAG
TTGCGTGACC CTTCTGATCC CCGCTATCAG TATCCGTTTA TCAATTGCAC CAATTGCGGG
CCGCGCTACA CCATCACCCG GTCTATCCCC TACGATCGGG TGTCGACTTC CATGGCCTGT
TTTCCCCTTT GCTCTCGTTG TCGGGCGGAA TACGAGGACC CCCTCGACCG CCGCTTCCAC
GCCCAGCCCA ACGCCTGCCC GCATTGCGGC CCCCGCGTGT GGATGATCAG CGCTACGGGG
CATGCCGTAA GCGACGACGG GCCGGTCCTC GCCGAGGCCG CTCGGTGGCT CGCCCGGGGC
AAGATTTTGG CCATCAAGGG GTTGGGCGGC TTCCATCTCG CCTGCTTGGC CACGTCAGAG
ACGGCTGTGG CGAGATTGCG GCAGCGCAAG CACCGCTTCG GCAAGCCCTT GGCGGTCATG
GTTCCGGATT TGGCTTCAGC GCACCGCATT GTCCGGATCA ATGGGGCTGA AGCAACGTGG
CTTTCAGGAA TCGTGCGCCC CATTGTCGTC TGCGAGAAGA AGGCGAGCAC ACTTCTGGCC
GGGGATATCG CTCCGGATAC CGACAGCGCC GGGGTCATGC TCCCCTACAC CCCGCTGCAC
CATGTGCTTC TCGACGAACT CCGGGGCCTC CTGCCGCAAG GCAGTGTCCC GGCCCTGGTC
ATGACCTCGG GCAATCTCTC CAGCGAGCCC ATCGCCCTCG GCAATCGAGA GGCCAGACAC
CGCTTGCACT CCATTGCCGA CGGCTTTGTC TTTCACAACC GTGATATCCT TATTCGCTGT
GACGATTCGG TGGTCCGGAT CCACCCGGAC ACAGCCAATC CGGTCTGGTA CCGCCGGGCC
CGCGGCATGA CCCCGAGCCC GGTTTTTCTT CCCCGCTCAG GGCCGTGCGT TCTGGGCACT
GGGCCGGCGC TCAAGGCAAC CCTGTGTCTG ACCAAATCGG ATCAGGCGTT TGTTTCCCAA
CATATCGGTG ACCTGGAAAA TCTGGAGACC TACGGTTTTT ATAAGGAAAT CGCCGAGCAT
CTGCAGCATA TCCTGCAGGT CGAGCCGCAA CTCGTGGTCC ACGACCTGCA CCCGGATTAT
CTGAGCTCCG GATTCGCGAA CGAGCGTCCG GAGGAGGTGG TCGCCGTGCA GCACCATGTG
GCGCATATCT ACAGTGTGTT GGCGGAGAAT CAATGTACAG AACCCGCTCT GGGACTGGCC
CTCGACGGAA CCGGGCTGGG GGATGACGGT ACGCTCTGGG GAGGCGAGGC CTTGCACGTG
CGCCCGGAGG CGGCCAGCTA TGCCCGCTTG GGCCATTTCA TGCCTGTGGG GTTGCCTGGC
GGTGAAGCGG CAATCCTGGA GCCGTGGCGT ATGGCCAGGA GTTATCTGGC GTCGCTGGGC
GCAAGTTCGC CCTCGGGCCG CCGGTGGCCG TGGCTGGACA ATTTCGCACC GGCCGACGGT
GTGCTCGGGC AGATGCTGGT CAAGGGGGTC AACGTGCCCC AGACCACGAG TTGTGGGCGG
TTGTTCGATG CGGTGGCCGG CCTGCTCGGA ATCGCCGAGC GCATCGCCTA TGAAGGGCAA
GCGGCCATCC GATTGGAGGC GTGTCAGGAC CTGCGTGTGG ACACGGGGTA TCCGTGCTCG
TGGATCGACA AGGAAGACAG GTGTGTACTT AATACATTGG AACTTTTTGC CGCCGTGCAC
CGGGACTGGC AGGCCGGTGA ACCGGTGGGC CGGATCAGCC GCCGTTTCCA CCTCGGTTTG
AGCCAGGGGC TGGCCGACTG GGTGGCGGCC CTGGCCGATC GGAGCGGAGT GCGGATTGTC
GGGCTCAGCG GCGGCGTGTT TCAGAATATA ACCCTTCAGC GGTTGCTGGT GCCGCTATTA
GAGCGTCACG GGCTGACAGT CCTGGTCCAC ACCGAACTCC CCCCCAACGA CGCCTGCATT
GCTCTTGGCC AGGCCTATTA TGGCCAGAAT CTCCTGCGTT GCCGCGACGT CCTGCCCCAG
CCTTGA
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| Protein sequence | MQPTPCSRQR FVVNGRVQGV GFRPFVYRLA LDHALSGFVQ NTSEGVVIEV QGLEDGIGRF
AVDLEKQLPP LAQLTSIQTE TLSPHDTPET SFHILSSSGG EGHEVLISPD VATCPECLAE
LRDPSDPRYQ YPFINCTNCG PRYTITRSIP YDRVSTSMAC FPLCSRCRAE YEDPLDRRFH
AQPNACPHCG PRVWMISATG HAVSDDGPVL AEAARWLARG KILAIKGLGG FHLACLATSE
TAVARLRQRK HRFGKPLAVM VPDLASAHRI VRINGAEATW LSGIVRPIVV CEKKASTLLA
GDIAPDTDSA GVMLPYTPLH HVLLDELRGL LPQGSVPALV MTSGNLSSEP IALGNREARH
RLHSIADGFV FHNRDILIRC DDSVVRIHPD TANPVWYRRA RGMTPSPVFL PRSGPCVLGT
GPALKATLCL TKSDQAFVSQ HIGDLENLET YGFYKEIAEH LQHILQVEPQ LVVHDLHPDY
LSSGFANERP EEVVAVQHHV AHIYSVLAEN QCTEPALGLA LDGTGLGDDG TLWGGEALHV
RPEAASYARL GHFMPVGLPG GEAAILEPWR MARSYLASLG ASSPSGRRWP WLDNFAPADG
VLGQMLVKGV NVPQTTSCGR LFDAVAGLLG IAERIAYEGQ AAIRLEACQD LRVDTGYPCS
WIDKEDRCVL NTLELFAAVH RDWQAGEPVG RISRRFHLGL SQGLADWVAA LADRSGVRIV
GLSGGVFQNI TLQRLLVPLL ERHGLTVLVH TELPPNDACI ALGQAYYGQN LLRCRDVLPQ
P
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