| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0835 |
|---|
| Symbol | |
|---|
| ID | 8418653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 988629 |
|---|
| End bp | 991757 |
|---|
| Gene Length | 3129 bp |
|---|
| Protein Length | 1042 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 645037403 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_003197704 |
|---|
| Protein GI | 258404962 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.181435 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.546259 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATCG TCAAATTCGC TATTACCAAA CCGGTCACCG TGCTTGTCGC GGTTATTCTG
ATTCTCCTTT TCGGCATCCT GGGTCTGCGG CAAATGCCCT ATCAGCTCAG TCCCACGGTC
ACCGAACCGG AGATTACGGT CACCACCGTC TGGCCCGGCG CGACACCATA CGAAGTGGAA
CGGGAGATTG TCGAAGAGCA GGAGGATGCC CTGAAAGGGG TCTCCAACCT GGTGGAAATG
GAAAGTTCCT GCCAAAACAA CCGCTCCCAG ATCACACTGC GCTTTAAGGT GGGCACGGAT
GTCGACACCG CTTTGCTACG CGTCTCCAAC AAACTTGACG AGGTCCCGTC GTATCCTGAT
GGCGTCGAAA AACCGATTAT CAATGCCTCA GGGGCCTCCA CCTCTCCTGT GGTCTGGATG
CTTCTGAAGA CGAAAGAGAC CTCCCCCCGG CCCATCCAGG AATACCGGAC ATTTTTCGAA
AACGAGGTTC GTCAATACCT TGAACGTGTA CCCGGGGTCG CTGACTTGCT GGTCTTCGGG
GGCACGGAAA AGGAAATGCA GGTCACCCTG GACCCGGAAA AACTCGCCGC CCATGCGCTC
CGGGTCCAGG AAGTCATCGC TGTTTTGCAA GGGGATAACA CAAATGTCTC CGCAGGGACG
ACTGGTATCG GCCGCCGCGA CTACCGCCTG CGCACCATCG GGGAATTCAA GACGCCTGCG
GATATCACTC AGACAGTTAT CCACGCCCGA GGCGACAACG TTGTCCGCGT CGGGGATGTC
GCCGAGGTCC ATTTCGGGTA TGCGGACAAC GATGCGGCCA TGATGCACAA CGGCCAAAAC
GGCATCGTCT GCGGCATCAA ACCTGAGCCC GGGGTCAACG TCCTGGATAT GACCAACCGC
GCCGAGGCCG TGGTCAACGA CCTCAATCAG GGACTGCTCG CCGACCAGGA CGTATTTTTG
GACTGGGTGT ACGATCAGCG TCCCTACATC AACGGGGCTA TTGACCTCGT CAAGCGCAAT
ATCCTGCTTG GGGGGCTGCT GGCGGTATTG ACCCTGCTCA TTTTCCTGCG TTCAGTGTCC
TCGACGATCA TTGTGGCCGC GGCGATTCCC ATAAGCATTA TCGGTACCTT TGTCTTCATG
AATGGCTTTG GCCGCAACCT CAATGTTATC AGCCTGGCCG GAATTGCTTT TGCTGTCGGC
ATGCTTGTCG ACAGCGCCAT CGTGGTCCTG GAAAATATCG ACCGCCACCG ATCGATGGGA
AAATCCCCTT TCGAGTCCGC CTACCATGGG GCCAGAGAGG TCTGGGGGGC GGTGCTGGCA
TCGACCCTGA CCACTGTCGC CGTCTTCCTG CCGGTGGTAT TCATTGAACA GGAAGCCGGG
CAATTGTTCA AAGACATCGC TATCGCCGTG ACCTGCGCCA TCGCATTGAG TCTTTTCGTT
TCGGTGCTGG TCATTCCCAT GCTCGCAAAA CATTTCTTCA CCTGGTCCCG CCGCCGCCAC
GATACCAAAA AACAGGGGCT ACTCGGCACC TTCGGATCCT ATTTTGTACG CGCCATGATG
GGCCTGGTTC GATTAGCCAC GGCCAATTGG GCCTCTCGAC TGATTACACT CACTGGATTG
ACCGCCCTGG CGATTTTCCT GGCTGTCGCC CTGTTTCCCA AACTCGAATA TCTCCCCCAG
GGCAACCGCA ACCTGATCTT GAACATCATG ATCCCTCCGC CCGGCCTGTC CTACGCCGAG
CGTGAGGACA TCGGCCAGCA GATCGCGGAT ATGGTCGCCC CCCGCATGGG CCAACAGGAT
GGGGGAGAAA CCGGTATCGA GGATCTGTTT TATATCGGAG CCGACACCTT GATGCTTTTT
GGTGCGACCG CCACCCACGA CCAAAAGGGC AGAGAACTCA TCCCGACCCT GCGACGGGTG
GTCAACAGTT TTCCAGGCAT CTTCGGTGTC AGCCTCCAGG CCGGTATTTT CGAACAGGAA
CTCGGCGGGG GACGCAGTAT CAACGTCGAT GTCCGGGGCA AAAATCTGGA CCAGGTCATC
CAGGCTGCAG GGGCCCTGTA TGGTTCGATT TCCAAAACCC TGCCCGGTTC CCAGATCCGT
CCCCAACCCT CTCTGGAAAC CTTGTATCCC GAGATCCGAT ATATCCCCAA ACAACAGCGC
CTCAAGGCGC TGGGCCTGAC CGTGGGCGAA CTCGGGACCA CCCTGGATGT CTTCATGGAC
GGACGGGATA TTGATGATTT CAAACAGGAA GGGGAAAAGA AAATCGATCT GGTGCTCAAG
GGCAAGCCGG GCATCAATAC CCCCGAAGAC CTGTTCCAGT CCCAGATCGT CACGCCAACG
GGAGCCGTTG TTCCGATCTC TTCGCTCAGT CGGCTGGAAC GGAGCTACGG CATCAGCGAA
ATCCGCCATC TCGAACGCCA ACGAACCGTG ACCCTTGAAG TCACCCCCCC GGAAACCCTC
GCCTTGCAAG CTGGCATGGA GACCATATCC TCAAAGGCTG TCCCCCAACT CAGGCAAGCG
GGGCTACTGG ACGGCATTTC AGTTGACATG AGCGGTGCGG CAGACAAACT GGAACAGACC
TGGGACGTGC TCAAAGGAAA TTTTATTCTG GCGATCATTA TCACCTATCT GCTCATGTCC
GCCCTGTTTG GAAACTTTCT CTACCCCTTG GTGATCATGT TCACCGTCCC CTTGGCTGCC
GCTGGGGGGT TTTTGGGGCT CAAACTGGTC GATTGGTTCC TGGTGCCCCA ACCTTTGGAT
GTACTGACCA TGCTCGGTTT CATCATCCTG ATCGGGATTG TGGTCAATAA CGCTATTCTG
ATCGTCCACC AGTCCCTGAA CAATATTCGT CTCAGTGGCA TGGGGCACCT CAAGGCGGTC
CGAGAATCGG TCAGGACCAG AATCAGACCG ATTTACATGA GCGCCTGTAC GTCCATTTTT
GGAATGCTCC CGCTGGTGAT CGCCCCGGGG CCCGGCTCCG AACTTTATCG CGGCCTGGGC
AGTGTCGTGC TTGGTGGATT GGCGTTGTCG ACGATTCTCA CAGTCTTTGT CACGCCTTCT
CTGTTGCTGT TTTTTATCCG CATGGAAAAA ATCCCGACAA TCACAGAAGA AAAATACGAA
TCGCCCTGA
|
|---|
| Protein sequence | MNIVKFAITK PVTVLVAVIL ILLFGILGLR QMPYQLSPTV TEPEITVTTV WPGATPYEVE
REIVEEQEDA LKGVSNLVEM ESSCQNNRSQ ITLRFKVGTD VDTALLRVSN KLDEVPSYPD
GVEKPIINAS GASTSPVVWM LLKTKETSPR PIQEYRTFFE NEVRQYLERV PGVADLLVFG
GTEKEMQVTL DPEKLAAHAL RVQEVIAVLQ GDNTNVSAGT TGIGRRDYRL RTIGEFKTPA
DITQTVIHAR GDNVVRVGDV AEVHFGYADN DAAMMHNGQN GIVCGIKPEP GVNVLDMTNR
AEAVVNDLNQ GLLADQDVFL DWVYDQRPYI NGAIDLVKRN ILLGGLLAVL TLLIFLRSVS
STIIVAAAIP ISIIGTFVFM NGFGRNLNVI SLAGIAFAVG MLVDSAIVVL ENIDRHRSMG
KSPFESAYHG AREVWGAVLA STLTTVAVFL PVVFIEQEAG QLFKDIAIAV TCAIALSLFV
SVLVIPMLAK HFFTWSRRRH DTKKQGLLGT FGSYFVRAMM GLVRLATANW ASRLITLTGL
TALAIFLAVA LFPKLEYLPQ GNRNLILNIM IPPPGLSYAE REDIGQQIAD MVAPRMGQQD
GGETGIEDLF YIGADTLMLF GATATHDQKG RELIPTLRRV VNSFPGIFGV SLQAGIFEQE
LGGGRSINVD VRGKNLDQVI QAAGALYGSI SKTLPGSQIR PQPSLETLYP EIRYIPKQQR
LKALGLTVGE LGTTLDVFMD GRDIDDFKQE GEKKIDLVLK GKPGINTPED LFQSQIVTPT
GAVVPISSLS RLERSYGISE IRHLERQRTV TLEVTPPETL ALQAGMETIS SKAVPQLRQA
GLLDGISVDM SGAADKLEQT WDVLKGNFIL AIIITYLLMS ALFGNFLYPL VIMFTVPLAA
AGGFLGLKLV DWFLVPQPLD VLTMLGFIIL IGIVVNNAIL IVHQSLNNIR LSGMGHLKAV
RESVRTRIRP IYMSACTSIF GMLPLVIAPG PGSELYRGLG SVVLGGLALS TILTVFVTPS
LLLFFIRMEK IPTITEEKYE SP
|
|---|
| |