| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0564 |
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| Symbol | |
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| ID | 8418376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 683255 |
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| End bp | 685486 |
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| Gene Length | 2232 bp |
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| Protein Length | 743 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645037132 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_003197439 |
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| Protein GI | 258404697 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAAA AGGCTTCCCC TTCCGCCGCA ATCCACGCCC AGTCTTCTGG GACGTCGCGT
AAGCAACGAG AGCATGTGGT TTCTCCTGGA ACCGTTGATT ATGAATCTCC ACTTGTTCAG
GCGTTGTCCA TTGCGTCCTC CCAGTTAGGG CGTCCCATTC GCCAGGATGT CCTCAAGGCA
GGGTTGCCCC AAAAGGCTCA GGACCCGACC GTTTCGCAGT GTATCCGGGC TGCCGAGCAG
GCCGGCATGC ACGCCCGTCT TGTCCGCCGG GATTTGGGCA AGATTTCTTC CCTGGTCTTG
CCGTGCGTTG CCCTTTTGCA GGAAGGCAAT GCCGCTGTTG TGACTGGCAT TGAGGACGGG
AGGGTCAAGG CGATTTTCCC TGAAGTTCCG GAAGCGACGC AGACACTGCC GTTGGAAGAA
TTCGAAAAGC AGTACACCGG CTATGCCATA TTTTGTCAGC TCGCTTACCG GGCCGATAAA
CGGGCTAGTG ATATCAAGCT GTTGGAGACC AAGGATTGGT TTTGGGGAAC CATCAAGCGG
TTCTGGCCGA TCTACAAGCA TGTGGTCCCC GCCAGTATTA TGGTCAACCT GCTGGCCTTG
GCGAGCCCTA TTTTTATAAT GAACGTCTAT GACCGGGTAG TGCCCAATGC GGCCCTGGAC
ACATTATGGG TCCTCGCTTT CGGAGTCGCG GTCGCCTATG GCTTTGATTT TTTGCTGCGC
ATCTTGCGTG GCTATTTTGT CGATACTGCG GGCAAGAATG CGGATGTGCT TATTGCCAGC
AAGCTCATGC AGCAGCTATT GGCCATGCGT ATGGACCATC GCCCGGAATC GACCGGGACA
TTGGCGAACA ATATTCGAGA ATACGAGTCC CTGCGGGAAT TTTTCAGTTC AACAACCCTT
CTTGCTTTGA TCGATCTGCC GTTTATCGCC CTGTTCATTG TCGTTATTGC GTATATCGGC
GGACCGATGG CTATCGCTCC AGCAGTGGCT GTGCCGATTG TTTTGTTTGT TGGCGTCGTC
ATACAGCAGC CCTTTCAGCG TGTTGTGGCC CAGAGCTATA AAGAAAATGC TCAAAAAAAT
GCTCTTATCG TCGAAGCCGT GAATTCCATG GAGACCATCA AGGCCAATAT GGCCGAGGGC
CAGGTTCAGG GGCGGTGGGA AGAAGCGGTG GGCATGAGCG CGGTCTCGTC GGCCAAGGCG
AAATCCCTGT CCAATTTTTC GATCAGTTTT TCCCAGTTTG CCGCCCATTT TGCGAGTATC
GGCATTATTG TCTGGGGGGT CTATCGTATT GCCCAGGGGG ATTTGACTCT AGGCGGTTTG
ATTGCCTGCA ATATTCTGGT CGGACGGGCT ATGGCTCCCC TGGGCGCGAT TGCCGCCATG
TTGACGCGTC TGCAACAGTC ACGCATGGCG CTCAAGAGTC TGGACATGCT CATGCGCGTG
CCCAATGAAC GGTCTGCAGA AAAGGAAACT CTGGCCGCCG GCGAACTCGA ACCCAGCGTT
GGTTTTGATT CGCTCGAATT TGAATACCCG GGGACACAGA TCCAATCCCT TCACGATGTC
TCGTTTCATA TCCAGGCCGG GGAACGGGTC GGTATTATCG GGGCCATGGG GTCGGGAAAA
AGCACATTGG CAAAATTACT CATGGGGTTC TACGAGCCCC AGAAAGGATC TATACGGCTG
GGAGGGATTG ACATCAGGCA ATTGGATCCC TCCGAACTCC GTCGCCGTGT CGGCTACGTG
CCCCAGGACC CCCGGCTGAT GTATGGAAGT GTTCGGGACA ATATTGTGCT TGGCATGCCT
GCTTTGGACG ATCATAGCGT CTTGCGGGCC GCGTCGCTGG CCGGGGTGCT GGATTTTGTG
CACAAGCATC CGGCCGGGTT CGGCATTCCG GTGGGGGAAG AGGGGAGGTA TTTGTCCGGC
GGACAGCGGC AGTCCGTGGC CTTGGCCAGG GCGTTGGTTT TAGATCCGGA TCTTTTGGTG
CTCGATGAGC CGACAAGTTC GATGGACAAC AGGACCGAAG CCCAAATCAA GGCCCGCCTG
CAGCAGATTC TCCCCGATAA GACGCTGATC CTTATCACCC ATCGTCGGAG CATGCTGGCG
CTGGTTGACC GGCTGGTTGT TCTGGATCAA GGGCGTGTCG CGGCTGACGG CCCCAAGGAA
GAAATTTTGC GCGCCTTGCA GCAAGGGGCT TTGATGCGTC CTCCGAAAAC CGGCCGAACG
CAAGCGGATT GA
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| Protein sequence | MTQKASPSAA IHAQSSGTSR KQREHVVSPG TVDYESPLVQ ALSIASSQLG RPIRQDVLKA
GLPQKAQDPT VSQCIRAAEQ AGMHARLVRR DLGKISSLVL PCVALLQEGN AAVVTGIEDG
RVKAIFPEVP EATQTLPLEE FEKQYTGYAI FCQLAYRADK RASDIKLLET KDWFWGTIKR
FWPIYKHVVP ASIMVNLLAL ASPIFIMNVY DRVVPNAALD TLWVLAFGVA VAYGFDFLLR
ILRGYFVDTA GKNADVLIAS KLMQQLLAMR MDHRPESTGT LANNIREYES LREFFSSTTL
LALIDLPFIA LFIVVIAYIG GPMAIAPAVA VPIVLFVGVV IQQPFQRVVA QSYKENAQKN
ALIVEAVNSM ETIKANMAEG QVQGRWEEAV GMSAVSSAKA KSLSNFSISF SQFAAHFASI
GIIVWGVYRI AQGDLTLGGL IACNILVGRA MAPLGAIAAM LTRLQQSRMA LKSLDMLMRV
PNERSAEKET LAAGELEPSV GFDSLEFEYP GTQIQSLHDV SFHIQAGERV GIIGAMGSGK
STLAKLLMGF YEPQKGSIRL GGIDIRQLDP SELRRRVGYV PQDPRLMYGS VRDNIVLGMP
ALDDHSVLRA ASLAGVLDFV HKHPAGFGIP VGEEGRYLSG GQRQSVALAR ALVLDPDLLV
LDEPTSSMDN RTEAQIKARL QQILPDKTLI LITHRRSMLA LVDRLVVLDQ GRVAADGPKE
EILRALQQGA LMRPPKTGRT QAD
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