| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0559 |
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| Symbol | |
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| ID | 8418371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 670843 |
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| End bp | 672183 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 645037127 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_003197434 |
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| Protein GI | 258404692 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGGTG ATCCTCTTGT GCTCGCCCTG GCCATGGTCG GGGTCATGTT TGTCCTATTG
CTGTCCAGCA CATGGATCGG CTTTTCCCTG ATCGGGACTG GGATCGCCGG GCTCTTGATG
TACGATCTGA ATTTGCCGCC GACATTGTCC ATCTGGGACA AGATCGGCGA TCTGTTGGCC
AACTCCATGT GGAATTCAAT GAATTCCTGG GCGCTCTCAG CATTGCCGCT TTTTGTCTTC
ATGGGTGAGA TCCTGTATCG CACGGCGATC TCCACCAAAC TGCTCAACGG GTTGGTGCCG
TGGCTGACAC GCATTCCAGG GCGGCTGTAC CATATCAATG TCGTGGCCTG CTCTCTGTTT
GCCGCTGTTT CCGGATCCAG TGCAGCGACC ACGGCCACGG TGGGCAAAAT CACCCTCGAT
GAACTCACGA AGCGCGGTTA TCACAAGAGT CTCGCTCTGG GGTCCCTGGC CGGCGCCGGG
ACAATGGGCT TTCTCATTCC TCCCAGCCTG ATCATGATCA TTTACGGTGT GTTGTCGGAC
ACCTCGATCG GCAAATTGTT TATTGCCGGG ATCATTCCAG GCCTTATTCT CGCCCTGCTG
TATTCACTCT ACATCATCAG CCAATCCCTC CTGCACCCTG AGTATGTTCC AGAAGAGCAA
GAGGCATCGT ACAGTTGGGG ACAGCGCCTT GGCCTGCTGA GAGAGATCCT GCCCGTTTTT
CTGCTTATAG CGCTCGTGCT CGGCGGGATC TATATGGGGA TCACCACACC GACGGAGGCG
GCCGCCATCG GCGTGGTCGG GGCTTTGGCT CTGGCCCTGT ATTTCCGGAA TCTGACCTGG
GAAAGCTTCA AAGAAGCGTG CCTGGCTGCA GTGCGCACCA GCGCCATGAT CTGTTTCATC
ATCGCCGGAG CCGCATTTTT GTCCCAGATT GTCGGCTTTG TGGGAATCGC CAGGGCGTTG
AGCGAATACA TCGCCTCTCT CCATCTGTCG CCGTATGTTC TGATCCTTGT AATCGGTATC
ATGTATCTTT TTCTGGGAAT GATACTGGAC GGAATATCGA TTGTGGTTAT GACCTTGCCG
ATTGTTTTGC CCATCGTGGT CCAGGCCGGT TTTACACCGC TGTGGTTCGG GATCTACCTG
GTCTTTATGG TCGAGTTGTC CCAGATTACG CCACCGGTAG GTTTCAGTTT GTTTATTATC
CAGCATATTT CCCAGCAGGA TTTGCCGACA ATTCTTAAGG CGACGTTCCC ATTTTTTCTG
ATAATGATCT TTATGGCTGT GCTGGTAACC CTGTTTCCGG AACTTGTTTT TTATCTCCCA
GCCAAAATGG TTGGTGGCTG A
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| Protein sequence | MIGDPLVLAL AMVGVMFVLL LSSTWIGFSL IGTGIAGLLM YDLNLPPTLS IWDKIGDLLA
NSMWNSMNSW ALSALPLFVF MGEILYRTAI STKLLNGLVP WLTRIPGRLY HINVVACSLF
AAVSGSSAAT TATVGKITLD ELTKRGYHKS LALGSLAGAG TMGFLIPPSL IMIIYGVLSD
TSIGKLFIAG IIPGLILALL YSLYIISQSL LHPEYVPEEQ EASYSWGQRL GLLREILPVF
LLIALVLGGI YMGITTPTEA AAIGVVGALA LALYFRNLTW ESFKEACLAA VRTSAMICFI
IAGAAFLSQI VGFVGIARAL SEYIASLHLS PYVLILVIGI MYLFLGMILD GISIVVMTLP
IVLPIVVQAG FTPLWFGIYL VFMVELSQIT PPVGFSLFII QHISQQDLPT ILKATFPFFL
IMIFMAVLVT LFPELVFYLP AKMVGG
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