| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0483 |
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| Symbol | |
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| ID | 8418289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 588318 |
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| End bp | 589343 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 645037045 |
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| Product | dihydrouridine synthase DuS |
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| Protein accession | YP_003197358 |
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| Protein GI | 258404616 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.322917 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGCCA CACCGCTTGC TCCTTTGGAT CAGCCACTCG CTATAGGGGA CAAGTCCCTT
ACAAACCGAT TCCTCCTCTC GCCTATGGTC GGGGTGACCC ATGTGGCCCT GCGCCGGCTG
CTCCACGACT TTGGGGGATT CGGACTGCAT TGGACGGAAA TGTGTTCCGC TTCAGCTGTG
CTCCAGGAGG ATCCCCGCAT CTCCCCGGTC TTCCGTTTCC ACCGCGATGA ACTTGCTACC
CTGGTCTGCC AGATCATGGG CAGCGAGCCC GAGACCATGG CCGCTGCAGC ACGCCGGATA
CAAGACGAGG GCTTTTTCGG TGTCGACATC AATATGGGCT GTTGCGTGGC CGCAGTCCGT
CAACAAGGGG CTGGAGCGGC CCTGCTGCGC GATATTTCCC GGGCGGCGGC GATAGTCGAT
GCCGTGCGTC AGGCCGTGGA CATCCCCCTC TTTGTCAAGC TCCGTAGCGG CTGGACTGAC
CAGGGGCCGG TCGTCGTCCA CGCGGCCCGA GCGTGTGCCA AGGCCGGAGC CGACGCCTTG
ATCGTGCACC CCCGCCTGGC CCCGGACCGC CGCACCCGGC CGCCCCAATG GAGAGACATC
CGGGCTGTCT GTGAGGCGGT GGATCTCCCT GTTTTCGGCA ACGGCAACGT TTTCACTGCT
GACGACGCAA CAGCCATGCT CCGCCAAACT GGCTGCCAGG GCATCGCCCT GGGCCGCATG
GCCGCGGCTC GTCCCTGGAT CGCCGCCGAG TGGCTCGGCC ATTTTCATCC TGCCCCTGAA
ACCTATCCGA AAGTGGCCCA ACGCATGGTC GAGCTCCTGT GGACGTCATT TCCCGAGGGG
CAAGCCCTGC GATTGTACCG CAAATTCATG AATTATTTCG CGGCGAACTT TGCTTTCGGG
CACCGGCTGC GCAGCGACTT GACCCGCTCC GCAACCCCGG AGGATCTTTA CAAGGAGATC
GCACACCACC TGACGCCGCT GCCGCAGCTC ACACTGCGCC CCAACAGCCT GCTGTTTGCC
GCGTGA
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| Protein sequence | MSATPLAPLD QPLAIGDKSL TNRFLLSPMV GVTHVALRRL LHDFGGFGLH WTEMCSASAV
LQEDPRISPV FRFHRDELAT LVCQIMGSEP ETMAAAARRI QDEGFFGVDI NMGCCVAAVR
QQGAGAALLR DISRAAAIVD AVRQAVDIPL FVKLRSGWTD QGPVVVHAAR ACAKAGADAL
IVHPRLAPDR RTRPPQWRDI RAVCEAVDLP VFGNGNVFTA DDATAMLRQT GCQGIALGRM
AAARPWIAAE WLGHFHPAPE TYPKVAQRMV ELLWTSFPEG QALRLYRKFM NYFAANFAFG
HRLRSDLTRS ATPEDLYKEI AHHLTPLPQL TLRPNSLLFA A
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