| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0404 |
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| Symbol | |
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| ID | 8418209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 493864 |
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| End bp | 495237 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 645036966 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_003197280 |
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| Protein GI | 258404538 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.294226 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCAGA ACAAAGGCGA CCTCACCACC CGCCCCATTC CGCAGCTCAT CCGCCAGATC
GCCATCCCGG CGAGCATCGG CATCTTTTTT CACACCATGT TCAATGTGGT CGACACCTAT
TTCGCTGGCC ATTTCTCCAC GCAGGCCCTG GCCGCGCTGT CGCTTTCGTT TCCAGCCTTT
TTCCTGATCA TTGCCATGGG CTCGGGACTG CAAACCGGCA CCACAGCGCT CATCGGCAAC
GCCCTGGGCA GCTACGACCA CGAAGAGGCG GGCCGCCTGG CCCTGCAGGG ACTGGTATTT
GGACTGATCA CCGGCATCCT CCTCACAGGC GTGGGGATCG CTGTCTCGCC GTGGCTGTTT
CGCTCCCTCG GCGCTTCAGG CGATTACCTG GCGATCACCC TGGAGTATAT GGACACCATT
TTCATCGGGG CGGCCGCCTT TCTGCTCGTG TACATGAATA ACGCCATCCT CCAGGCCCAG
GGCGACACCC GTCCCTTTCG CAACTTCCTC ATTGCCGGTT TCGCCGCCAA TTGTGTCCTC
GATCCGTGGT TCATCTTCGG GGGGTACGGC GTGCCCGCAA TGGGCATCCA GGGCGTGGCC
TTGGCCACCA TCTGCATCCA GGCTGGAGGC GCGGCCTACC TGGGCTGGAA AGCCCGCAAA
ACCGGCCTGG TGCGCATGCA ACAATGGCGC GACCTCATCC CCCAATGGCG CCCCTGTCGG
GAAATCGCCA GACAGGGACT CCCCTCGAGC CTGAACTACA TGACCATCGG CCTCGGCATC
TATGTCATCA CCTATTTTGT CAGCGACTTC GGTCCGCAGG CTGTCGCCGC CTACGGCTCG
GCCATGCGCG TGGAACAGAT TGCGCTGTTG CCGAGCATCG GCCTGAACAT CGCCACGTTG
AGCCTGGTGG CCCAGAACCG CGGCGGACAG CGCCATGCCC GGATCTGGGA GACCATCGGC
AAAGCTCTGC AATACGGCGC CATAGTCACC GGCATCGGGA CCGTCGGGGT CCTGCTCCTG
GCGCGGCCAC TGATGGGGGT CTTCACCGAC GATCCGGCGG TCGTGGATAT CGGGACGACC
TACCTGCGCA TCGACGCCCT CGTCTTTTTC GCCTACGTCA TCCTGTTTGT GCACGTCGCC
GCGTTGCAGG GCGTCAAGCG TCCCATGTTC GGGGTCTGGA TCGGCCTGGC TCGGCAGATC
GTCGGCCCGG CCCTTGTCTT CAGCCTGCTG ATCAAGGTCT TGGGCGTGGG GTTGCTCGGC
ATCTGGTGGG GGATTTTTGG AGTCACCTGG GCCGCGGCCC TCACCGCCGC GCTTGTCGGG
CGGCGCTATC TGGCACGGGT GCTGGCGGAG GATGCGCAGC GTGACAAGAC ATAG
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| Protein sequence | MPQNKGDLTT RPIPQLIRQI AIPASIGIFF HTMFNVVDTY FAGHFSTQAL AALSLSFPAF
FLIIAMGSGL QTGTTALIGN ALGSYDHEEA GRLALQGLVF GLITGILLTG VGIAVSPWLF
RSLGASGDYL AITLEYMDTI FIGAAAFLLV YMNNAILQAQ GDTRPFRNFL IAGFAANCVL
DPWFIFGGYG VPAMGIQGVA LATICIQAGG AAYLGWKARK TGLVRMQQWR DLIPQWRPCR
EIARQGLPSS LNYMTIGLGI YVITYFVSDF GPQAVAAYGS AMRVEQIALL PSIGLNIATL
SLVAQNRGGQ RHARIWETIG KALQYGAIVT GIGTVGVLLL ARPLMGVFTD DPAVVDIGTT
YLRIDALVFF AYVILFVHVA ALQGVKRPMF GVWIGLARQI VGPALVFSLL IKVLGVGLLG
IWWGIFGVTW AAALTAALVG RRYLARVLAE DAQRDKT
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