| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0349 |
|---|
| Symbol | |
|---|
| ID | 8418154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 433942 |
|---|
| End bp | 436221 |
|---|
| Gene Length | 2280 bp |
|---|
| Protein Length | 759 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645036915 |
|---|
| Product | MscS Mechanosensitive ion channel |
|---|
| Protein accession | YP_003197229 |
|---|
| Protein GI | 258404487 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGTAT TGTTGCGCAA GACGTTCTTG GGAGTTGTCC TTTCAGGCCT CGTCGCAGTG
GCCGTGCTTG CTGCGCCCGT GCAGGCTGCC GACCAGGAGC AAGACACCCA GCCTGCGGCG
TATGCGACCC TGGCCGATAT TTTGGAAAAC GAACAGGCCC GCAACAAACT CATCCAGGAC
TTGCGGGAGA TGGCCGCCAA GCAGGGCGAG TCGGGTGCTG TCGGCGCGCC CCAGGCGGCA
AGTCCGGAAA AACTCTCTCT GCCGCGGCGA ATGGCGCATA TCGTCAGCGG GTTTGCTGCC
ACCATCGGGA CCCGTTTTGA GACCATCGCT GGCAACCTCA AGGGGATATT CGCGACAGCG
CCGGGCGACA AAGCGCCTTT CGATTACAAG GCGCTGGGGC AGGCTGCCTT GAACCTGGGA
CTGGTCATCC TGACGGTCAT TGCGGCCTTT TTTCTTTTCC GCCGTCTGGC CCATCCATTT
TTTGCCCGCT TGAGTGCCTG GTCGCGGCAA GGATCAGGCA AAAGCGCCCT CTTACGGCTC
ACCGGCATTG TGGCTCTGGC GGCGGGCGGC GATGTGCTGG TCGTGGGACT GGCGTATGTG
ACCGGCAACC TTGTGGCCAC CTTCGCGGTT GGTGAGAGCG GCGCGTTGAG CACCCAGGTT
GCCTTGTTTT TAAACGCCTT CTTGCTCATT GAGCTGCTAA AGGCCGGCAT ACGAATGCTG
TTTGCCTCGC GTTATGACGG CTTGCGCCTT TTGCCCCTGG CAGCAGAGCA TGCCGCGTAT
TGGAACCGCT TTTTGGCCCG TCTGGCCGGG TTTGTGGGCT ACGGCATGCT TTTCGTGGTC
CCGCTGACGG CCCAGAACAT GTCCAATGCA GCCGGCCAGG GCGTGGGGCT GCTGATCATG
CTCGCGGCGT TTATCTACGC CACGACAATA GTGCTCCAAA ACCGGGTCGC CGTCCGCGAC
GGGTTCAGCG CCCGGGCCGA GAAATTCAGC ATGGGCACCT CGCAGGTCCT GCTGCGCATC
GCGGCGCGAA TCTGGCACCT GCTGGCCATC ACCTATCTGG TGGTGGTTTT GCTGGTGACC
CTGATCCGGC CCTCCGACGC CCTGCCCTTT GTGATGCTGG CCACCCTGAA ATCCCTGATA
TTTATTGGTG CCGGTGTGCT CGTATCGGGC ATTGTAGCCC AGTTTCTCGG CAAACGTGTC
ACCTTGTCCC CGGAACTGCG GCGCAAGCTT CCCCTGCTGG AGACCCGCTT GAACGCCTAC
GTACCGATTG TATTCAAGGT CGTGCGAACG ATCATCATCC TCGTGGTCGG TCTATTTATC
CTCGACGCGT GGGGGCTCTT TGATTTCTCA GGCTGGTACA CCAGCGTAGC CGGACGGAAT
CTGATCGGCA CCGGGGCCAA TGTGGCGGTT ATCCTGCTCT TTGCCCTCGG GGTCTGGATC
GCTCTCGCCA GTCTGATCGA GCACCGCTTG AATCCGGATA CCGGCACCGG GGCGCCCACG
GCCCGGGCCA AGACCTTGCT GAGTCTGTTT CGCAATGCGG TGGCGATTAC CATCACGACG
ATTACGGCGA TGATCCTGCT TGCCGAAATC GGTATCAACA TCGGGCCGCT GATCGCTGGT
GCGGGGGTAC TGGGGCTGGC CATCGGTTTC GGGGCCCAAA AACTGGTCCA GGATATTATC
ACCGGGGTGT TCATTCAGGT CGAAAACGCC ATGAACACCG GAGATGTTGT CACCGCTGGG
GGGATTACCG GCGTGGCCGA ACGCTTGAGT ATCCGCTCGG TTGGCTTGCG GGACCTCTCC
GGCACCTACC ATATCGTGCC GTTTTCTTCT GTGGACACGG TCTCCAATTT CATGCGCGAT
TTTGCCTTCC ATGTCGGGGA ATACGGCATC GCCTACCGTG AGGATATCGA CGAGGCCGTG
ACCCATTTGC GCGCCGCCTT TGACGAACTC GCCGCAGATC CGGAATACGC GGACGCTCTT
TTGGAACCGT TGGAAGTCTC CGGGGTCACA GCCCTGGCGG ACAGTTCGGT GAACATCCGG
GTACGGATCA AGACAACGCC GGGCATGCAA TGGGGTGTCG GGCGCGCCTA TAACCGTCTG
GTCAAACGCC ACTTCGACGC CGCAGGCATC GAGATCCCCT TCCCGCACAC CACGATCTAC
TTCGGGGAAA ACAAGGACGG CAGTGCCCCG GCCGCCAATC TGCGCATGGT CCAGGACGCA
CTTGAGCAAG AGGCGCAAGA CACAGCACCG GGCGAAGCAA AAAACGAGAA TGCAAAGTAA
|
|---|
| Protein sequence | MLVLLRKTFL GVVLSGLVAV AVLAAPVQAA DQEQDTQPAA YATLADILEN EQARNKLIQD
LREMAAKQGE SGAVGAPQAA SPEKLSLPRR MAHIVSGFAA TIGTRFETIA GNLKGIFATA
PGDKAPFDYK ALGQAALNLG LVILTVIAAF FLFRRLAHPF FARLSAWSRQ GSGKSALLRL
TGIVALAAGG DVLVVGLAYV TGNLVATFAV GESGALSTQV ALFLNAFLLI ELLKAGIRML
FASRYDGLRL LPLAAEHAAY WNRFLARLAG FVGYGMLFVV PLTAQNMSNA AGQGVGLLIM
LAAFIYATTI VLQNRVAVRD GFSARAEKFS MGTSQVLLRI AARIWHLLAI TYLVVVLLVT
LIRPSDALPF VMLATLKSLI FIGAGVLVSG IVAQFLGKRV TLSPELRRKL PLLETRLNAY
VPIVFKVVRT IIILVVGLFI LDAWGLFDFS GWYTSVAGRN LIGTGANVAV ILLFALGVWI
ALASLIEHRL NPDTGTGAPT ARAKTLLSLF RNAVAITITT ITAMILLAEI GINIGPLIAG
AGVLGLAIGF GAQKLVQDII TGVFIQVENA MNTGDVVTAG GITGVAERLS IRSVGLRDLS
GTYHIVPFSS VDTVSNFMRD FAFHVGEYGI AYREDIDEAV THLRAAFDEL AADPEYADAL
LEPLEVSGVT ALADSSVNIR VRIKTTPGMQ WGVGRAYNRL VKRHFDAAGI EIPFPHTTIY
FGENKDGSAP AANLRMVQDA LEQEAQDTAP GEAKNENAK
|
|---|
| |