Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0178 |
Symbol | |
ID | 8417982 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 226313 |
End bp | 227356 |
Gene Length | 1044 bp |
Protein Length | 347 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 645036743 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_003197058 |
Protein GI | 258404316 |
COG category | [R] General function prediction only |
COG ID | [COG4239] ABC-type uncharacterized transport system, permease component |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0202572 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACCGTC TGTGGCACAT ACTCCGCCCG GGACCGCTGA CCAGACGCCG CTGGGCCGCG TTCAAGACCA ATAAACGCGG CTACTGGTCC ATGTGGCTCT TTCTGCTGCT CTTCCTGGCC TCTCTGGGGG CCGAAGGCAT CGCCAACGAC AAGCCGTTGC TCGTGTGGTT CAAAGGTCAG ATGTATGCCC CGGTCATCCG CTCCTATCCG GAAACCACTT TTGGCGGGGT CTTTCCTTCG GAAACCGATT ACCGCGACCC CTTTGTCCAG GAACTCATTG AGGACAACGG CTGGATGCTC TGGCCACCTG TGCGGTACAG TTACGACACC ATCAATTACG ACCTCGACCA GCCGGCCCCC TCCCCGCCGA GCACAGAAAA TTGGCTGGGG ACGGACGATC ACGGCCGGGA TGTCCTGGCC CGGGTCATTT ACGGATTTCG GGTTTCGGTC CTGTTTGGCC TTGTATTGAC CGTATTGAGT TCACTTGTCG GAGTGATGGT AGGAGCCCTG CAGGGCTACT TCGGGGGCAG GGTGGATATA CTGGGGCAAC GATTTCTGGA GATCTGGTCC GGTTTGCCGG TCCTTTTTGT GCTCATCATC CTCTCGAGCT TTGTACAGCC AAGCTTCTGG TGGATTCTGG GCATCATGCT CCTGTTCAGC TGGATGCCCT TGGTGGACCT TGTTCGGGCG GAATTCCTGC GGGCGCGCAA CATGGAGTTC GTCCTTGCCG CCCGGGCCCT GGGCGTGGGG CACGCCATGA TCATGGCCAA ACATATCCTT CCCAACGCCA TGGTCGCGAC CATGACGTTT CTGCCCTTCC TGCTCAACGG ATCTATTACC ACACTGACGT CACTGGATTT TCTCGGTTTC GGGTTGCCGG CCGGCTCCGC TTCGCTGGGC GAACTCCTTG CGCAGGGCAA GGCCAATCTC CATGCCCCCT GGATCGGTAT CTCCAGTTTT ATGGTCCTGG CCGGCCTTTT GACCCTCCTG GTCTTTATCG GGGAGGGAGC ACGGGACGCC TTTGACCCGC GCCACACACA ATAA
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Protein sequence | MHRLWHILRP GPLTRRRWAA FKTNKRGYWS MWLFLLLFLA SLGAEGIAND KPLLVWFKGQ MYAPVIRSYP ETTFGGVFPS ETDYRDPFVQ ELIEDNGWML WPPVRYSYDT INYDLDQPAP SPPSTENWLG TDDHGRDVLA RVIYGFRVSV LFGLVLTVLS SLVGVMVGAL QGYFGGRVDI LGQRFLEIWS GLPVLFVLII LSSFVQPSFW WILGIMLLFS WMPLVDLVRA EFLRARNMEF VLAARALGVG HAMIMAKHIL PNAMVATMTF LPFLLNGSIT TLTSLDFLGF GLPAGSASLG ELLAQGKANL HAPWIGISSF MVLAGLLTLL VFIGEGARDA FDPRHTQ
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