| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0006 |
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| Symbol | |
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| ID | 8417808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 4842 |
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| End bp | 7070 |
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| Gene Length | 2229 bp |
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| Protein Length | 742 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 645036569 |
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| Product | ribonucleotide-diphosphate reductase subunit alpha |
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| Protein accession | YP_003196886 |
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| Protein GI | 258404144 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATGC CGGACGATCT CCCCGACCTC TCTTTGAGCG AAAACGCTGA ACTCGTGCTC
CGGAAACGGT ATGTGCGCAA GGGGCCTGAG GGTGAGGAAA TGGAAACCCC GCAGGAATTG
TTTTGGCGGG TCGCAGCGGC TATTGCGGCC AGCGAAACGG CCTATGAGCA GACTCCTTTT
TCACAAGAGG CGCTGGCGCG GCGGTTTTAC GATCTGATGG CCTCATGCCG GTTCTTTCCC
AATTCGCCCA CCTTGATGAA CGCCGGCACC GAACTCGGAC AATTGGCGGC CTGTTTTGTG
CTCCCGGTCG GCGATTCCAT GGAAGAAATC TTTGACGCCA TCAAATATGC CGCACTGATC
CACAAATCCG GTGGTGGCAC CGGGTTTTCG TTTTCCCGCC TGCGAGCGGC CGACAGCCGT
GTCGGATCCA CCGGGGGTGT TGCCTCCGGC CCCATCTCGT TTCTGCGCAT CTTCAACACA
GCCACGGAGC AGGTCAAACA AGGCGGCACC AGACGTGGCG CCAACATGGG CATCCTGCGG
GTGGACCATC CGGATATTTT GGAATTTATC CGGGTGAAGG AACGGGAGGG AGAGTTGAAC
AACTTCAACC TCTCGGTGGC CTTAACCGAA GACTTCATGC GCCGGGTCGA AGCCGACGCG
GAATACCCGC TGATCGCGCC GCAAAGCGAG AAAGAGGTCG GGCGGCTGCG GGCCAGAGAG
GTCTTTACCC TGTTGGTGCA AAAAGCCTGG GAAAGTGGCG ATCCGGGGAT TATCTTTCTG
GATCGGATCA ATCGGGACAA TCCGACTCCC CAACTCGGCG ACATCGAAGC CACTAATCCG
TGCGGAGAAC AGCCCTTGCT GCCCTATGAG GCCTGCAATC TGGGGTCCAT CAATCTGAGC
CGGTTTGCCG ATGCACCGGC CCAGGAGCTC GATTGGGAGG GACTCAGGGA GTCGGTCCAC
CTCGCGGTGC GCTTTTTGGA CAATGTCATC GACGCTTCGG TCTACCCGTT GCCCCAGATC
ACGGATCAGG TCAAACGCAA CCGGAAAATC GGTCTGGGAA TCATGGGTTG GGCCGATCTT
TTGTACCAGC TGCGCATAGC CTATGACAGC CGACAGGCGC TTTCTCTCGG AGAGAAGGTC
ATGGATTTTA TCCAGAAGGA GGCACGCTCA GCCTCAAAAG ATCTGGCTCG GGAGCGAGGT
CCTTTTCCGG CCTATGCCGA TTCGGTTTTT GGCAAGCAGA ATCTCGGCCC CTATCGCAAT
GCCACAACCA CAACCATTGC CCCGACAGGG ACCTTGTCCA TACTTGCCGG GTGTTCGTCT
GGGATCGAAC CGTTGTTTGC CTTGAGTTTT GTCCGCGAGG TCATGGACGG TGAGCGGTTG
GTAGAAACCA ACCCCATTTT CCGTCAGGCC ATGGAAGAGG CTGGCTGCGC CAGCCAACGG
CTGTTGGACG AGGTGGCCCG CAAAGGGACG GTGCGTGATA TGGAACTCGT GCCCGATGAT
ATGCGCAACG TCTTCGTGAC CGCCATGGAT ATCGACGGTG AGGCCCATCT CCGGATGCAG
GCCGCGTTTC AGAAATACAC GGACAATGCC GTGTCCAAGA CGGTCAATCT GCCCCACGAG
GCCACCCAGG AAGACATCCG TCACATCTAT TGGCTGGCCT ACGAACAGGG GTGCAAAGGG
GTCACCGTTT ACCGCGACGG CTGCAAATCG GTCCAGGTCC TGAGCACGGA AGAAAGCCGC
AGTCAACGCC AGGCTGAAGA GGAAGGAAAA GCCCCGGTCC GCCAACGGCC GGACGTGGTC
TACGGCTTTA CCCAGAAGGT CAAGACCGGA CTTGGAGAGC TGTATCTGAC CGTCAATGAG
GTCGATGGGC GGCCCTTTGA GGTCTTTGCG ACCATCGGTC GTTCCGGACG GTCCATAACC
GCCAAGGCTG AAGCCATTGG GCGGCTGGTC TCTCTGGCCC TGCGCTCCGG TGTTCCCGTG
CGCGAGGTGG TCAAGCAACT CAAGGGCATC GGCGGGGAGC ACCCGGTGTT TCAGGAAAAA
GGCCTCTTGC TTTCCATCCC TGACGCTGTG GGGCGTGTTC TGGAACAGCG CTATCTGCAG
GACGAACTGG CCACCAGCGG CTCCGGGAAG GATTTGACAA AGCGTTCTTG CCCCGAATGC
GGTGGAGAAT TGGTTTTCCA AGAGGGGTGT TTTCTCTGTC AGGCTTGCGG GTACACCAAA
TGCGGCTGA
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| Protein sequence | MQMPDDLPDL SLSENAELVL RKRYVRKGPE GEEMETPQEL FWRVAAAIAA SETAYEQTPF
SQEALARRFY DLMASCRFFP NSPTLMNAGT ELGQLAACFV LPVGDSMEEI FDAIKYAALI
HKSGGGTGFS FSRLRAADSR VGSTGGVASG PISFLRIFNT ATEQVKQGGT RRGANMGILR
VDHPDILEFI RVKEREGELN NFNLSVALTE DFMRRVEADA EYPLIAPQSE KEVGRLRARE
VFTLLVQKAW ESGDPGIIFL DRINRDNPTP QLGDIEATNP CGEQPLLPYE ACNLGSINLS
RFADAPAQEL DWEGLRESVH LAVRFLDNVI DASVYPLPQI TDQVKRNRKI GLGIMGWADL
LYQLRIAYDS RQALSLGEKV MDFIQKEARS ASKDLARERG PFPAYADSVF GKQNLGPYRN
ATTTTIAPTG TLSILAGCSS GIEPLFALSF VREVMDGERL VETNPIFRQA MEEAGCASQR
LLDEVARKGT VRDMELVPDD MRNVFVTAMD IDGEAHLRMQ AAFQKYTDNA VSKTVNLPHE
ATQEDIRHIY WLAYEQGCKG VTVYRDGCKS VQVLSTEESR SQRQAEEEGK APVRQRPDVV
YGFTQKVKTG LGELYLTVNE VDGRPFEVFA TIGRSGRSIT AKAEAIGRLV SLALRSGVPV
REVVKQLKGI GGEHPVFQEK GLLLSIPDAV GRVLEQRYLQ DELATSGSGK DLTKRSCPEC
GGELVFQEGC FLCQACGYTK CG
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