| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_2144 |
|---|
| Symbol | |
|---|
| ID | 4958003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 2343826 |
|---|
| End bp | 2344902 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640181315 |
|---|
| Product | branched-chain amino acid aminotransferase |
|---|
| Protein accession | YP_001113486 |
|---|
| Protein GI | 134299990 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
|---|
| TIGRFAM ID | [TIGR01123] branched-chain amino acid aminotransferase, group II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA CAGTAGAACA GTTAGAAGGA AGCCAATTAA AACCCCTGTA TCAAGATGAT
TCCCAGCTTG GTTTTGGTCG CATATTTACC GATCGGATGT TTAGTATGCG GTTCGTCAAT
AATGCATGGA ATGAGGCGCG TATTGAAAAA TATAGATCCT TTACTCTTGA TCCATCTTCT
TGCGTGTTTC ACTATTCCCA GGAAATTTTT GAGGGATTGA AAGCCTATGC AGCACCGGAT
GGTAGAATTC TTCTTTTTAG ACCTGATCAA AATGCACGAA GGATGAATCG GTCTGCAGAG
CGCTTGGTCA TGCCTACTAT ACCAGAGGAA GATATCATAC AGGCCATTGA AGAATTGGTG
TTGGCAGAAA AAAGATGGCT ACCCAAGCAA CCGGGGACTT CTATTTATAT TAGACCCACT
ATGATTGCAA CAGAAGCATT TTTGGGGGTT CATCCGTCTG CAGAGTATAT TTTTTACGTT
ATTTTAAGTC CTGTGGGAGC TTATTATAAG GGTGGTTTTA AACCCATCAG TCTTTATGTT
GAGGATACCT ATGTAAGAGC AAATGTGGGC GGTGTCGGAG ATATTAAAAC CGGCGGAAAT
TATGCGGCCA GTTTAATGGC AGGATACCGA GCCCAACAGA AAGGTTTTTC TCAAGTTCTG
TGGTTGGATG GCCGTGAGAG GAAATATATA GAAGAAGTTG GCGCTATGAA TATGTTCTTT
GTTTATGGTA AAAAATTGGT AACTCCTAAA CTCACAGGTT CGATCTTACC AGGTATTACC
CGGGCGTCTG TATTAGAACT TGCTCGATAC TTAGGATTAG AGACCGAAGA AAGAATAATA
AGTATTGACG ATGTTATAGA TGGAATTAGT TCGGGAGAAG TTACCGAAGC CTTTGGTTCT
GGGACGGCCG CTGTAATTTC TCCTGTGGGC TCTCTCTATT ATAAAGAAAA GGATTTTGTT
ATTAACCATA ACGAAGTTGG TTCCGTTACA CAAACACTTT ATGATAAATT GGTTAATATT
CAATACGGCA GAGAGGAAGA TCCCTTCGGT TGGGTAAGGG AAATTGGTAG ATATTAA
|
|---|
| Protein sequence | MKITVEQLEG SQLKPLYQDD SQLGFGRIFT DRMFSMRFVN NAWNEARIEK YRSFTLDPSS
CVFHYSQEIF EGLKAYAAPD GRILLFRPDQ NARRMNRSAE RLVMPTIPEE DIIQAIEELV
LAEKRWLPKQ PGTSIYIRPT MIATEAFLGV HPSAEYIFYV ILSPVGAYYK GGFKPISLYV
EDTYVRANVG GVGDIKTGGN YAASLMAGYR AQQKGFSQVL WLDGRERKYI EEVGAMNMFF
VYGKKLVTPK LTGSILPGIT RASVLELARY LGLETEERII SIDDVIDGIS SGEVTEAFGS
GTAAVISPVG SLYYKEKDFV INHNEVGSVT QTLYDKLVNI QYGREEDPFG WVREIGRY
|
|---|
| |