| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_2118 |
|---|
| Symbol | |
|---|
| ID | 4955789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 2314647 |
|---|
| End bp | 2315579 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640181288 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_001113460 |
|---|
| Protein GI | 134299964 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2064] Flp pilus assembly protein TadC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.128736 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAATC TACTTCAACT CATTGTAGGC ATGATTTTCT TTGCCGTGAC CTTTGCCACC
CTGGTTCTTT ACCGCCTTGT CTTCGGGGAG CGTATACAAG TGGCCCAACG GATGGATCAG
GTGGTTGGCT CCCCGGCACC AATCCCTGTC CGGGAACTGG AACTCAGCGT GCCCCTTTAC
CAAAGGGCCA TCCACCCGGC TCTTTCCACA ATGGCTAGAT GGTTAACCAG ATTCATACCC
TCTGCCCGGG AAAAAGAACT TCAGAAGAAA ATCATTTATG CCGGTAACCC CGGCCACCTG
GATGCCAAGG AATGGGTGGT AGTTAAGTAC CTGGGAGCCG TGGGGCTGGG CTTCTTCTTC
TGGTCCTGGG CTGGCATGGC CGGTAAGGCT CTGCCCCAGT GCCTTTTACT AGGAGCTACC
GGTGTTCCCC TGGGTTGGCT TTTGCCTGAT TTATATTTAA ACTCTAGAAT TCGGAACCGA
AAAACCCAAG TGGAAAAGTC CCTCCCCGAT GCCCTTGATT TGTTAACAGT CAGCGTGGAA
GCAGGTTTAG GCTTTGATGG TGCCCTAATG AAGGTGGCAG AAAAAACTAA AGGTATAATG
GCAGATGAAT TTATCCTCAT GCTGCAGGAA TGCCACATGG GGAAACCTCG CCGTGAAGCC
CTGCGGGATA TGGCCACCAG ATTAGACGTA GACGATTTAT CCAGCTTCTG TGGTTCCATT
ATCCTGGCAG ATACCTTAGG CATCAGCATC GGAAACGTTT TACGCACACA ATCCCAGCAA
ATGCGTCAGA AACGTCGCCA AAAAACAGAG GAATTAGCCA TGAAGGCTCC CATTAAGATG
TTATTCCCCA TGGTGTTTTT TATTTTTCCT GCAATCTTTG TTATCCTGCT GGGCCCGGCG
GCTCTCCAGA TTATGAAGGC CTTTGCAAAC TAA
|
|---|
| Protein sequence | MENLLQLIVG MIFFAVTFAT LVLYRLVFGE RIQVAQRMDQ VVGSPAPIPV RELELSVPLY
QRAIHPALST MARWLTRFIP SAREKELQKK IIYAGNPGHL DAKEWVVVKY LGAVGLGFFF
WSWAGMAGKA LPQCLLLGAT GVPLGWLLPD LYLNSRIRNR KTQVEKSLPD ALDLLTVSVE
AGLGFDGALM KVAEKTKGIM ADEFILMLQE CHMGKPRREA LRDMATRLDV DDLSSFCGSI
ILADTLGISI GNVLRTQSQQ MRQKRRQKTE ELAMKAPIKM LFPMVFFIFP AIFVILLGPA
ALQIMKAFAN
|
|---|
| |