| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1566 |
|---|
| Symbol | |
|---|
| ID | 4958236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 1705094 |
|---|
| End bp | 1706110 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640180739 |
|---|
| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_001112919 |
|---|
| Protein GI | 134299423 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAATG ATATATTGTC GATAATTAAC TTAAGAACAT ACTTCCCGGT AAAAACTTCT
CAGGGAAAGG ATGTATTTGT TAAAGCTGTT GACGGTGTTA ACCTTAAGGT GGAAAGAGGT
GAAGTGCTAG GTGTCGTGGG GGAATCCGGG TCCGGCAAAA GTACCATTGC TTATACTGTG
ATGGGTATGT ACAAACCTAC AGGTGGGAAA ATCCTTTTTC ATGGTCAAGA TATCAGTATA
TTAAGCAGCA AACGACCATT GTTATTAAAA AAGGATTTAC AAATTGTATT CCAAGACCCA
GGTTCTTCTC TAAATATATA TCAGGATATT AAGCAGATTT TGGAATTGCC GTTAAAAGTT
CATAAAATAG TTAATAAAAA TCAGATTAAG GAAAAGATTA TCAGTCTCCT GCAGATGGTT
GAGTTGTCGG AAAGTTATTT GCATAAATCC CCGGTGGCTA TGGGGGGCGG GGAAAGACAA
ATGGTCTCCA TCGCACGGGC ATTGGCCTGT GAGCCTAGAT TCATTATTTT GGATGAGCCG
ACTTCGGCCC TTGATGTATC CATTCAGGCA AAGATCATTA ACATGTTATT AAAGCTACAG
AGGGAAAAAC AACTTACTTA TATGTTTATA ACCCATGATT TAAGTCTGAT GAGAAATATT
GCTACCCGAG TTGCCATTAT GTATCTGGGA AAGATTTGTG AAATTGCTAA AACCAATGAA
TTCTTTTCTA AACCCCTTCA TCCCTATACA AGAATGCTAT TATCCTCTAT TCCGGTGGTA
TCCGAAGAAG AAGAAGCATT TAAGCCAAAG AAAATTAAGT CCACTGGTGA AATACCTTCC
CCGGTGAATA TACCCTCGGG TTGCAGTTTT CATTTGCGTT GTCCAGAAAG AACAGAATTG
TGTTATAAAG AAGAACCCAC CACCGTGGAA GTTGTTCCGG GGCACTTTGT TCGTTGTCAT
TTATACCAAG GAATGAAACT TCAAGGTGAG ATTGCAGGGA TAGGAGATGG ATATTAG
|
|---|
| Protein sequence | MSNDILSIIN LRTYFPVKTS QGKDVFVKAV DGVNLKVERG EVLGVVGESG SGKSTIAYTV
MGMYKPTGGK ILFHGQDISI LSSKRPLLLK KDLQIVFQDP GSSLNIYQDI KQILELPLKV
HKIVNKNQIK EKIISLLQMV ELSESYLHKS PVAMGGGERQ MVSIARALAC EPRFIILDEP
TSALDVSIQA KIINMLLKLQ REKQLTYMFI THDLSLMRNI ATRVAIMYLG KICEIAKTNE
FFSKPLHPYT RMLLSSIPVV SEEEEAFKPK KIKSTGEIPS PVNIPSGCSF HLRCPERTEL
CYKEEPTTVE VVPGHFVRCH LYQGMKLQGE IAGIGDGY
|
|---|
| |