| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1035 |
|---|
| Symbol | |
|---|
| ID | 4958056 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 1108909 |
|---|
| End bp | 1109991 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640180205 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_001112395 |
|---|
| Protein GI | 134298899 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGCC GAAAAATACC GGATATCAAT GAAATATTAA TACGCACCGT CGGCATGAAC
GGTTCAGACC TGCACTTAAA TGTGGGGACA TCTCCGGCGG TACGGGTTTA TGGCGAACTT
GTGCGGATGG AAGATGTACC GAGGTTGCTG CCCAAGGATA TAGAGGATAT CATTTATCCC
ATTCTTCAGC CACACCAAAG GGAGCAACTG GAGAAGGATT TGGAACTGGA TTTCTCCTAC
TCAATTCCAG GGGTAAGTCG CTTTCGTGGT AATATTATGT GGCAAAGGGG AACGCTGGCT
GTAAACTTCC GAGTGGTAGC CATAAATATC CCACAACTGG ATGATTTAGG CTTGCCGCCA
ACCGTCAAGG AATTTTCACG CTTACCCCGA GGGTTGGTGC TGGTGACTGG ACCCACCGGC
AGCGGCAAAT CCACCACCCT AGCTTCGATC ATTGATCTAA TTAACCAAGA AAGAAGCTTA
AACGTCGTAA CCATAGAGAA TCCCATTGAA TTTTTGCATA GTCACAAAAA ATCCATTATT
AAGCAGCGGG AGGTGGGCAT TGATACCCAC TCCTTTGCCA ACGCCCTACG TCATGTACTG
CGCCATGACC CCGATGTTAT TTTAGTTGGG GAAATGCGGG ACTTGGAAAG TATCTCCATA
GCACTTACTG CCGCCGAAAC GGGTCATTTG GTGTTTTCTA CCCTGCATAC CCAAACAGCC
ACCTTGGCAG TGAATCGTAT TGTGGATGTG TTCTCAGAAG GCATGCGTAA CCAGATCAGA
CAGCAACTGG CAGATTCTTT GCAAGCTGTT ATTGCCCAGC AGCTGATACC CCGAGCGGAC
GGTAAGGGTA GAACCATTGC AGTGGAACTT TTACTCAGCA ATCCTGCTGT GAGAAATTTA
ATTCGTGAAG GAAAAGAGCA CCAATTGTAT ACGGTTATGC AGACTTCCCG GAATACCGGC
ATGCAGACCA TGGATCAAGC ACTGGCAACC CTTTGTCTAA CAGGGAAAAT TAGCCGTAAC
ATGGCCCTTG AGCGCTGTGT TGATAAAATT GAACTGGAAC GGGCCTTGAA CAGAGGCTTC
TAA
|
|---|
| Protein sequence | MDSRKIPDIN EILIRTVGMN GSDLHLNVGT SPAVRVYGEL VRMEDVPRLL PKDIEDIIYP
ILQPHQREQL EKDLELDFSY SIPGVSRFRG NIMWQRGTLA VNFRVVAINI PQLDDLGLPP
TVKEFSRLPR GLVLVTGPTG SGKSTTLASI IDLINQERSL NVVTIENPIE FLHSHKKSII
KQREVGIDTH SFANALRHVL RHDPDVILVG EMRDLESISI ALTAAETGHL VFSTLHTQTA
TLAVNRIVDV FSEGMRNQIR QQLADSLQAV IAQQLIPRAD GKGRTIAVEL LLSNPAVRNL
IREGKEHQLY TVMQTSRNTG MQTMDQALAT LCLTGKISRN MALERCVDKI ELERALNRGF
|
|---|
| |