Gene Dole_3052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_3052 
Symbol 
ID5695912 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp3658944 
End bp3660107 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content59% 
IMG OID641265669 
Producttwitching motility protein 
Protein accessionYP_001530932 
Protein GI158523062 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT 
TIGRFAM ID[TIGR01420] pilus retraction protein PilT 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGAGAG CGGAAGTCGA CCATATTTTA ACAAGGCTGC TGGACTCGTA CGAAAATGTG 
TCCGACATCA ACCTCACCGT GGGCAAACCG TTCCAGGTGG AGAGCTCCGG CGAGCTGATC
GCCGTGGACA TCGGCGACGG CTACAGGCCG CTGACCCCTT TCCAGACAGA GTCCTTTGCC
CTGACCCTGA TAGAAGGCGA CCGGCGACTC AACGAAATGC TGCTCCACTA CGGCTCCTGC
GACCTCTCCT ACGCGCTGCC CGGCAAGGCC CGTTTCCGCG TAAACGTGTT TTCCCAGTCC
GGGCAGTACT CCATCGTGCT GCGGCGCCTG GAGTCCACCA TTCCCACCAT TGAAAGCCTG
GAATTGCCGC CCATCTTCCA GGAGATGTCA AAAGAGCTCA ACGGCATCAT TTTCTTTACC
GGCGCCACCG GTACCGGTAA ATCGACCTCC CTTGCCGCCA TCCTTGAAGA GATCAACGAG
AAACGGTCCG TGCATGTGGT GACCCTGGAA GACCCGGTGG AGTACATGCA TCCCCATAAA
AAGGCCACCT TCAACCAGCG GGAGCTGGGC ACCGATTTTG ACACCTTCAT CAACGGCCTG
CGGGCCGCCC TGCGCCAGGC CCCCAAGGTC ATTCTGGTGG GCGAAATGCG GGATAAGGAG
TCCATCGAGA TCGGCCTGCG GGCCGCCGAG ACCGGCCATC TGGTGCTTAC CACCCTGCAC
ACGGTGGATG CCGGCCAGAC CATCAACCGT ATTCTGGGCA TGTTCGACGT GGACGAGGAG
CAGCAGATTC GTATTCGACT GGCCGAGACC CTGCGGTGGG TGGTGTGCCA GCGGCTGCTG
CCCAAGGTGG GCGGGGGCCG GGTGGCAGCC TTTGAGATTC TGGGTACCAA CCTGCGGGTC
AAGGACACCA TTTTGAACGG CGAGGGCGAA GGCCGCACCT TTTACGAAAT TATCAAGCAG
AACGAGGCGT TTGGTTATGC CACCTTTGAT GACTACATCA TCAATCTATA CTCAGAGGGG
CTTATCACCG AGGATGTGGC CAAGGGCTAC GCCTCACGCC GGGGCGTTGT GGGCCGGGGT
ATTGACCAGG TGAAAAGCTC CAGGGGCGAG GCCACCACCG AGATTGAACA CCTGGAAATT
GACCGCAAGT ACGGCAAAGC ATAA
 
Protein sequence
MQRAEVDHIL TRLLDSYENV SDINLTVGKP FQVESSGELI AVDIGDGYRP LTPFQTESFA 
LTLIEGDRRL NEMLLHYGSC DLSYALPGKA RFRVNVFSQS GQYSIVLRRL ESTIPTIESL
ELPPIFQEMS KELNGIIFFT GATGTGKSTS LAAILEEINE KRSVHVVTLE DPVEYMHPHK
KATFNQRELG TDFDTFINGL RAALRQAPKV ILVGEMRDKE SIEIGLRAAE TGHLVLTTLH
TVDAGQTINR ILGMFDVDEE QQIRIRLAET LRWVVCQRLL PKVGGGRVAA FEILGTNLRV
KDTILNGEGE GRTFYEIIKQ NEAFGYATFD DYIINLYSEG LITEDVAKGY ASRRGVVGRG
IDQVKSSRGE ATTEIEHLEI DRKYGKA