| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3018 |
|---|
| Symbol | |
|---|
| ID | 5695877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 3621717 |
|---|
| End bp | 3622898 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641265634 |
|---|
| Product | putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_001530898 |
|---|
| Protein GI | 158523028 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCACCCTA CGCCATGTGA CACTTATCCC GGTGTCGATA ATACCGGCCT GTATCTTCAC
ATTCCCTTTT GCGCAAAAAA GTGCCGGTAC TGCGACTTTT TTTCCCTGGC CGCTCCGGAC
CGGATTTTCT CTTTTGTCAA GGCGCTGTTA AGGGAAATTC AGCTGTCAGG CCCCCTTGTT
CCCGGCATGG TGGACACGGT CTACATCGGC GGCGGCACCC CTTCGCTGCT TTCCGCCGCT
CAGGTTGATG TTGTGCTTTC CACGGTTCGG GACAATTTTC GCCTTTCCAC CGATGCCGAG
ATCACCATGG AGGTCAACCC CGACTCGGCG ACCCCCGCCT GGCTTGCGGC AGTCCGGCAG
GCCGGCGTCA ACCGGATCAA CATCGGCATC CAGTCTTTCG ATGATGCCAG GCTTGCCTTT
CTGGGCCGGA TTCATTCGGC CCGACAGGCC GAAGACGCCC TGGAAGCGTC CCGTCGGTGC
GGGTTTGACA ACATCGGCGC GGACATCATT TATGCGATTC CCGGCCAGAC CCGACGGGAC
CTGGAAAAGG ACCTGGACCG GACGCTTTCC TTTTCCCCCG ACCACATCTC CTGTTATATG
CTTACCTGTG AGCCGGGTAC CCCCCTGGCC CGGGCACTTG AAAACCGTGA ATTTGACCCG
CTGCCGGACC GGCAGGCCGC CGACCTGTTT GACACGGTCA GCCGCTATCT GACCGGCCGC
GGGTATCTTC ACTACGAGAT TTCCAATTTC GCCACAAGCC CGGACACCAT GGCCCGGCAC
AACACCAAGT ACTGGCGCCG GGTGCCTTAT GTGGGCCTGG GCCCGTCGGC CCACTCTTAT
ACCGGTACGC ATCGCTGGTG GAACCACCGC GATCTTGACG CCTATGAGAA GGCCCTTCAG
CAGGGCCGTC CGCCCCGGCA GGAGGCAGAA ACCCTGACCC CGGCCCAGCA GATGCTGGAG
GCGATCTACC TGGGCCTTCG CACAGCCGAC GGCATTTTGA TGGCCGCTTT TGAAGCGGAG
TTCGGTGTCG ACTTTTGCGC CTGTTTTGCG CAACCGCTTG CCCAATGCCG GGACCAGGGC
CTGGTGGTGC TTTCTCGTGG CCGCTGCATG CCCACCCGCC GTGGCATGCG CTTTCACGAG
ACCGTGACGG CCCGGTTTGT CGGCCGGATT GACCTGCCTT GA
|
|---|
| Protein sequence | MHPTPCDTYP GVDNTGLYLH IPFCAKKCRY CDFFSLAAPD RIFSFVKALL REIQLSGPLV
PGMVDTVYIG GGTPSLLSAA QVDVVLSTVR DNFRLSTDAE ITMEVNPDSA TPAWLAAVRQ
AGVNRINIGI QSFDDARLAF LGRIHSARQA EDALEASRRC GFDNIGADII YAIPGQTRRD
LEKDLDRTLS FSPDHISCYM LTCEPGTPLA RALENREFDP LPDRQAADLF DTVSRYLTGR
GYLHYEISNF ATSPDTMARH NTKYWRRVPY VGLGPSAHSY TGTHRWWNHR DLDAYEKALQ
QGRPPRQEAE TLTPAQQMLE AIYLGLRTAD GILMAAFEAE FGVDFCACFA QPLAQCRDQG
LVVLSRGRCM PTRRGMRFHE TVTARFVGRI DLP
|
|---|
| |