Gene Dole_0942 details

Gene Information

• Locus tag: Dole_0942
• ID: 5693777
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfococcus oleovorans Hxd3
• Kingdom: Bacteria
• Replicon accession: NC_009943
• Strand: -
• Start bp: 1098694
• End bp: 1100559
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 641263539
• Product: extracellular solute-binding protein
• Protein accession: YP_001528829
• Protein GI: 158520959
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0747] ABC-type dipeptide transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGAAAA TTAAGTATCT GATATCGGCG CTGATGGTCC TGTGCATGCT CCTCGCCTGG 
GGCTGTTCTT CAGACAAAGA TGAGCAGCAG GCCGCACCGG AGCCGGCCCA TTCACCCTTC 
CGGGCCCCTC TGGCCGACAC CGATCTTCCG GAAAATATAG ACTGGCTGAC CAACGACACC 
GACCCGGTGT TTGCCTCTCC GGACGCGGTC ACCGGCGGCA CCCTGCGACT GTCCCTGCTG 
AGTTTTCCCT TAACCTTCCG GGTGGTGGGG CCGGACTCCA ACAGCAGCTT TCGCAGCGCC 
ATCCTGGGCA ACCAGCTCTC CCTGATCAGC ATTCATCCCA ACACCGAGCG CATTGTACCG 
GAAATCGCCA CCCACTGGGC ATTTGGCAAA GACAAAAAAA CCATGTACTT CAGGCTCAAC 
CCTGATGCCC GGTGGTCCGA CGGCATGCCG GTGACGGCCC ACGACTTTGC CTACACCCTG 
GCGTTCATGC GGTCCCCGCA CATCGTGGCG CCCTGGTACA ACGACTACTA TACAAAAGAA 
ATAGAAAAGG TCGTGGTGTA TGACGACCAC ACCCTGGCCG TGGTGGCGTC CAAACCCGAC 
CCCGACCTTT ACCTGAAGGT GGGCATCTCC CCCACACCCA GCCACTTTTA CGGCGACCTG 
GACGAAAATT TCGTGCGGGA CTACAACTGG AAAATCGCCC CCAACACCGG GCCTTACCAG 
GTATCCGGGT TTGAAAAGGG AAAGTTTGTG GAATTTTCCC GAAAGCCCGA CTGGTGGGCC 
TCTGATCTGC GTTTCTTTAA AAACCGGTTC AACGTGGACA AGGTAGTCTA CACCGTTGTC 
AAGGACTTCA ACATGTCCTG GGAGTACTTC AAGCAGGCCG AGATCGACGC GTTTCCCCTG 
ACCATGCCCG ACTTCTGGCA CGACAAAACG CAAACCCCGG TCTTTGACAA GGGGTATGTG 
CATCGCATCT GGTTTTTCAA CGACACCCAG CAGTCGGCCA TGGGCATGTG GCTCAACCAG 
GATATCGATA TCTTCAAGGA TGTCCGGGTA CGTTACGCCT TTGCCCATGC CATGAACATT 
CAAAAGGTCA TCGACACCGT GCTGCGGGGC GACTACTTTC GCCTGGAGCA GGGATTCGTG 
GGATACGGCG ACTACACCAA CCCCGATGTC AAGGCCCGGC GGTTCGACCT TGAAAAGGTC 
AATGACTACA TGACCGGTGC GGGGTGGCAG CGGGGGACGG ACGGCATCTG GGAAAAAGAG 
GGCATGCGGT TTTCCGTGGA TGTGACCTAC AGCCATGATG GCCACACCCC GCGGCTGGTG 
GTGTTAAAAG AGGAGGCCCG GAAGGCGGGC ATCGAACTCA ACCTGCGCCG GCTGGACCCT 
TCGGCGTCCT ACAAGCAGGT GCTGGAGAAA AAGCACGAGG TGGGGTGGGT GGCATGGAGC 
ACGTCCCTGA GGCCCCAGTA CTGGGAGCAT TTTCATTCGG AAAACGCCCA CAAGCCCCAG 
ACCAACAACA TCACCAACAC CGACGACCCG GAGATGGACC GGCTGATCGA GGCCTACCGC 
GCCAGCCTGG ACGCGGAGGA ACGAAAGGTT TTATCCCGGC AGATTCAGGC GAAAATTCAC 
GAGATCGGCG CCTTTGTGCC CACCTTCATG GTGCCCTATG TGCGCCAGGC CTGCTGGCGA 
TGGTGGCGAC TGCCCGACCC GCCGGGCACC CGGCACACCG ATGACCTGTT CGAACCCTTT 
TCCAGCGGCA CCGGCGGCCT GTTCTGGTTT GACCGGAAAC TGTACGACGA GACTCAGGCG 
GCCATGAAAG CCGGCACCGC CTTTGACCCG GTGACCATCG AGGACAGAAC ATTTTATCGG 
CAATAA 

 

Protein sequence

MPKIKYLISA LMVLCMLLAW GCSSDKDEQQ AAPEPAHSPF RAPLADTDLP ENIDWLTNDT 
DPVFASPDAV TGGTLRLSLL SFPLTFRVVG PDSNSSFRSA ILGNQLSLIS IHPNTERIVP 
EIATHWAFGK DKKTMYFRLN PDARWSDGMP VTAHDFAYTL AFMRSPHIVA PWYNDYYTKE 
IEKVVVYDDH TLAVVASKPD PDLYLKVGIS PTPSHFYGDL DENFVRDYNW KIAPNTGPYQ 
VSGFEKGKFV EFSRKPDWWA SDLRFFKNRF NVDKVVYTVV KDFNMSWEYF KQAEIDAFPL 
TMPDFWHDKT QTPVFDKGYV HRIWFFNDTQ QSAMGMWLNQ DIDIFKDVRV RYAFAHAMNI 
QKVIDTVLRG DYFRLEQGFV GYGDYTNPDV KARRFDLEKV NDYMTGAGWQ RGTDGIWEKE 
GMRFSVDVTY SHDGHTPRLV VLKEEARKAG IELNLRRLDP SASYKQVLEK KHEVGWVAWS 
TSLRPQYWEH FHSENAHKPQ TNNITNTDDP EMDRLIEAYR ASLDAEERKV LSRQIQAKIH 
EIGAFVPTFM VPYVRQACWR WWRLPDPPGT RHTDDLFEPF SSGTGGLFWF DRKLYDETQA 
AMKAGTAFDP VTIEDRTFYR Q