| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0394 |
|---|
| Symbol | |
|---|
| ID | 5693213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 453936 |
|---|
| End bp | 455579 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641262975 |
|---|
| Product | GH3 auxin-responsive promoter |
|---|
| Protein accession | YP_001528281 |
|---|
| Protein GI | 158520411 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.20196 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATGC TTACCAACAT CGCTCACCAG GCCGCCATGG CGGTTTCACA AAAGGGATAC
CGGACCTACA CATCGGGGCT GGCCGATATT CGGCCCCATC AGCAGCGCAT ACTGGCTTCC
ATCCTCAGGG CCGTCAGGGG GTCTGCGTCC GGCCGGTATT ACGGCCTGAC CGGAGAGGAA
TCCATTGAGC GGTTTCGGGC GAAAGTCCCC CTGACCGAGT ATGCCCACTG GGAAAAACAG
ATTGAGCGGC AGAAAAAGAC CGGGGAGCCG GTTCTCAGCA CCAGCCCCTG CGAGCGGTAT
CAGCCCACCA GCGGTTCCAC GTCGGACATT AAGTGGATTC CCTACACCCG GCAGTTCCTG
TCCCAGGTGG ACGCTTTTAT TTCACCGATG ATCTACCGCA TGTACCGGCA GTACCCCGGC
ATTCGAAAGG GGGTTCACTA CTGGTCTCTT TCATGGATTC CAACAGAGCT GCGCAGCCAT
ATCAGCCCGA ACATCAACGA CGATCTGAAG CTGCTGCCCT GGTGGAAACG GATGTTCATG
TCTCTGACCA TGGCGGTGCC GGACAGCGTG GCCCACGCGC CCACGTCAGA AGCCTCCATG
TTTGCCACCG CCTGCTATCT GTGCGCGGCC GAAAACCTCT CCCTGGTATC CGTGTGGAGC
CCCACGTTTC TGCTGAGCAT GCTTGATCTG ATTTCCGACC ATCGCCGGGA AATGGCCTCG
GTGCTGGCAT CAGGCGCCTG GGGAGAGGCC CGGCAGTCTC TGGCCTACCT GCCGTGCCCC
CGTTCGCGGC ACGGGGCCGA CATCCTGGCA AACCGGGAAG CAGAGCTGTC ACCCAAAACC
CTCTCCCGGT TATGGCCGGG CCTTCGGGTG ATCAGCGCCT GGGACACGTG GACCTCAACG
CCATGGGCAA GCAAGATAAA AGAGCTGTTT CCTTTTGCCG TGCTGGAGGG AAAGGGTCTG
CTGGCCACCG AGGGCATTGT CTCCATGCCC TTTGACGGCC AATACCCATT GACCTACCAG
TGTCACTTTT ACGAGTTTGT GGACTGGCAT TCCGGCGACA TCCTGAACGC GTGGGAGCTG
AAAAAGGGGC AGGTCGTCCA GCCGGTGCTG ACCACCGGCG CCGGCCTGCT GCGATACCTT
TTGCATGACA GGCTGGAGGT GACCGGTTTT CTGCAAAGCT GCCCCTGCTT TCTTTTCCTG
GGCCGGTCCG ACGGCGTGGA CCTGGTCGGT GAAAAGATGA GTCCTGAGGC GGCCGGCCGG
GTGCTGAACA GGATATCGGA CACCTACAGC AGCGTCCGGC CGGTCAGCCT GCTGGCCGTG
CCCAGCAGCC ATTCCGGCGC CACCGACGGA TACGTGCTCC TGTGTGAAGG CGATGAAACG
GCCCCGGCCG GCGATATCGC TGAACGGGCG GAAAAGGAAC TGCGCGGAAT TTATCACTAC
AACCTGGCCC GGGACCTGGG CCAGCTGGCC CATCTGAAAT GCGTTGTGTC CCCGGCGGCA
ACCGCGATTT ACCAGTCCCG GGCCGCGGCC CGGGGCATGG TGGCGGGCAA CCTGAAAATA
GAGCCGGTGG TCCTGTGGAA CTGCGCGCTT CCCGGCCCCC TGTGCAATGC CTTTGCCGGG
CCGGTGGACG CACGGGTGAA TTAA
|
|---|
| Protein sequence | MDMLTNIAHQ AAMAVSQKGY RTYTSGLADI RPHQQRILAS ILRAVRGSAS GRYYGLTGEE
SIERFRAKVP LTEYAHWEKQ IERQKKTGEP VLSTSPCERY QPTSGSTSDI KWIPYTRQFL
SQVDAFISPM IYRMYRQYPG IRKGVHYWSL SWIPTELRSH ISPNINDDLK LLPWWKRMFM
SLTMAVPDSV AHAPTSEASM FATACYLCAA ENLSLVSVWS PTFLLSMLDL ISDHRREMAS
VLASGAWGEA RQSLAYLPCP RSRHGADILA NREAELSPKT LSRLWPGLRV ISAWDTWTST
PWASKIKELF PFAVLEGKGL LATEGIVSMP FDGQYPLTYQ CHFYEFVDWH SGDILNAWEL
KKGQVVQPVL TTGAGLLRYL LHDRLEVTGF LQSCPCFLFL GRSDGVDLVG EKMSPEAAGR
VLNRISDTYS SVRPVSLLAV PSSHSGATDG YVLLCEGDET APAGDIAERA EKELRGIYHY
NLARDLGQLA HLKCVVSPAA TAIYQSRAAA RGMVAGNLKI EPVVLWNCAL PGPLCNAFAG
PVDARVN
|
|---|
| |