| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_1399 |
|---|
| Symbol | rdhA |
|---|
| ID | 8658324 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | - |
|---|
| Start bp | 1295467 |
|---|
| End bp | 1296951 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | reductive dehalogenase |
|---|
| Protein accession | YP_003330826 |
|---|
| Protein GI | 270308768 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0618677 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAACTT TTCATTCAAC ACTTTCCCGA AGAGATTTTA TGAAGGCTTT GGGTCTGGCT
GGTGCCGGTG TCGGAGCAGT GTCTGCTGCC GCCCCGGTTT TTCATGATGT GGATGAGCTG
ACTGCTTCTT CCGGCGGAGT ACAGAAGCTG CCTTGGTGGG TTAAAGAGCG GGATTTCAAA
GATCCTTCAG TGCCCATTGA CTGGCAGAAT CTGCCCAAGC TGGAGGGTAC TTTCCCCTAT
CAGGCCAGGC CAACCCTGAC GGCCCAGGAG AGATATGCCA TGGGTATTCC CGGCGGCAGT
TCGGGTGTCT GGGCCAGCCC TGAACAGGCG CAAGTTCTTT TTGATTACAT GAAAAAGGAA
TTTCCGGGCT GGGAACCCGG CTATGCCGGT CTGGGAGACC ACCGGACAAC CGCTCTCTTT
ATGGCGACCA AATTTATGCG TATGGGCATG TGGCCCGGCG AAATAAACAT GGGCGGCAAC
AGGGTCAATG TCCTTCAGGC TATACTTAAG GCCGGAGGCA CTGCCACCTT CCCCTCCTTC
CTGGGTCTTC GCTCCAGTGA AACACTCCGC CCGCAGGATT TTGGTGTACC GCGCTGGGAA
GGTACACCCG AAGAGAACCT GCTTACTCTG CGTCAGGTAG TCCGTTTCCT TGGCGGCTGT
GATGTGGGTG CTCAGGAACT GGATTCAGAC GTTTTCAAGC TTTTCCATGA GAAAAGCGGC
GGAAAACAGC TGGTGATAGA AAATGTAGAC GAAGCGGCTG AAACCGCAAC CAAGCTGGTC
ATTCCCGCTA AAGCCAAATA CATACTCCAG TGGACTGCCC GCCAGCCTTA CGAATCCACC
AGACGCCAGG CCGGTGAATA TGAGGATGCT GCTGTATACT ACTCCTATCA AAGATTCCCC
TTTGTCGGGG CTATCATTCA GGAGTTTATC CATGCCATGG GGTATACTGC GGTTTCCACC
CATATGATGG GTTACCATAC CAATGCCATA GCTACCTTGA CCGGTATGGG GGAACATTGC
CGTATGTCAT CACCCACCTT GGTTCCCAAA TACGGCACTA CCAACCGGGC TATGTGGGTA
ATTATCACCG ATATGCCCCT TATGTCCACT AAACCCATAG ACTTCGGCGT GTATGACTTC
TGCAAGACCT GCGGTATCTG CGCAGACAGT TGTCCGTTCG GCCTTATTGA GAAGGGCGAC
CCGTCCTGGG AAGCTAACCA ACCCGGTTCA CGCCCCGGTT TCAACGGCTG GCGTACCAAT
ACCACTACCT GCCCGCATTG TCCGGTCTGC CAGGGCAGCT GCCCCTTTAA TACCAATGGT
GACGGTTCAT TTATACATGA TTTGGTACGT AATACCGTTT CCGTTACTCC TGTTTTCAAC
AGTTTCTTTG CCAATATGGA GAAAACCATG GGTTACGGAC GCAAGGACCC GCGTGATTGG
TGGAATATAG ATGATTATAC CTACGGTATA AATACATCCT ACTAA
|
|---|
| Protein sequence | MKTFHSTLSR RDFMKALGLA GAGVGAVSAA APVFHDVDEL TASSGGVQKL PWWVKERDFK
DPSVPIDWQN LPKLEGTFPY QARPTLTAQE RYAMGIPGGS SGVWASPEQA QVLFDYMKKE
FPGWEPGYAG LGDHRTTALF MATKFMRMGM WPGEINMGGN RVNVLQAILK AGGTATFPSF
LGLRSSETLR PQDFGVPRWE GTPEENLLTL RQVVRFLGGC DVGAQELDSD VFKLFHEKSG
GKQLVIENVD EAAETATKLV IPAKAKYILQ WTARQPYEST RRQAGEYEDA AVYYSYQRFP
FVGAIIQEFI HAMGYTAVST HMMGYHTNAI ATLTGMGEHC RMSSPTLVPK YGTTNRAMWV
IITDMPLMST KPIDFGVYDF CKTCGICADS CPFGLIEKGD PSWEANQPGS RPGFNGWRTN
TTTCPHCPVC QGSCPFNTNG DGSFIHDLVR NTVSVTPVFN SFFANMEKTM GYGRKDPRDW
WNIDDYTYGI NTSY
|
|---|
| |