| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_1395 |
|---|
| Symbol | rdhC |
|---|
| ID | 8658320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | - |
|---|
| Start bp | 1289461 |
|---|
| End bp | 1291065 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | |
|---|
| Product | sensory box sensor histidine kinase |
|---|
| Protein accession | YP_003330822 |
|---|
| Protein GI | 270308764 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGACA GCTTGGATAC AATCCAGATA GATGCTTTGC CGGTGGGCAT TGTAGTCATA
GATACTTCAT CTAGAAAGAT TGTAAATATA AACAGGGTTG CCCAGAAACT TATCGGGGCA
GGGGCATCCG AGATTATCGG CCATTCCTGC CACAAGTTCA TTTGCCCGGC GGCAGAGGGT
AATTGCCCGA TACTGGATAT GGGACAATCA GTAGACAATG CCGAAAGGCA GCTGCTGACT
AGCAGTGGCA AGCTGATTAC CATCTTAAAA ACTGCAAGCA GGGTTACCAT AAATGGCAGG
GAGTTTCTGT ATGAAGTCCT GCAGGATGTG ACTGATCCGG TTAATCTCCG TAAACAGCTT
CAGATACAGG TGGCCGAGCG TACCAAAGAG CTGGCCGAAA TAAACAGCAA ACTGGTTCAG
GAAATAAAAA ACCATGAGAA AACGGAACGG AAATTAAACG AACTGTTTAC CCGTTATTCC
ATGTTTTTTA ATAATTGCAA TGACGGGTTA ACTTTGATTG ATTTTTCGGG TGAAACACCG
CCCGGTAAAT ATATTGAAGT AAACAAGGCT TTTTGCCAGA TGGTCAATTA TTCACGGGAA
GAGCTCCTTC AGCTGACCCC GCTTGACCTT ACCGCTTCTG ATATGAAAGA TTATGCGCTG
GAAAATACCA AACTGGTTAT TGAGTCAGAA TATGCGGTAC TCCGTTTCCC GAATGTATAT
ATTACCAAAG ATGGCAGACG GCTGGATTGC GAAATAAATG CCAGCTTTAT TTATTTGAGC
GGCAGGGAAG TAGCAGTGGT GGTCTATCGT GATATTTCGG AAACCAAGCG GCTTGAACAG
AGCCTTCGGG AAGCCTATGA GCGGGAACTG CAGGCCCATG CGGAGGTTGA AGACCAGCTG
AATCAGCGTA ATTACTTTAT GCGGGCACTG GTGCATGAGC TCAAAACACC CCTTACTCCC
CTGCTTGCCT CCAGTGAATA CCTGGTATCC GAGCTTTCAG GCAGTGCTCT GCTGGGTTAT
GCCCGAAACA TGCAGAATGG GGCTATTAAT CTGAATAACA AGATTGATGA CCTTATGAAC
TTGGCCAAGG GGGAAATAGG CCAGCTGCAA ACAGACCCTG AGTATGCCAG TATCAGAAAA
GTTATCGGGG ATTGTGTAGA TTACCTTCAG CCGCAGGCCC AGAAAATGCA AAAACGGATA
GTGCTGAATT TTGGCAGCGA TATTCCGTTA ACGTTATTTG ATAAAAAAAT GATTCATCAG
GTGGTGCTTA ATCTGCTCAG CAACTCACTC AAGTTTTCCC GTACCGGCAG TGAAATTTGT
ATTGAGGCCG TGAAATCAGG GGATAATATA AAAATATCGG TCAGAGACCA GGGTACAGGT
ATACCCAAGA ATAAGCAGCA GGGAATTTTT ACTCCTTATT ATCGTATCAA GACCAAGCGG
GACAGGTACG GAGGGTTGGG TTTGGGGCTG GCTCTTTCCA AGATGATTGT TGAACTGCAC
CGGGGCGAAA TATGGTTTAC CAGTGAATAC GGCCACGGCA GTACCTTTTA CTTTACACTG
CCGATAAGGA GCGAATGGGA TGAAGACACT GATAATAGAG GATGA
|
|---|
| Protein sequence | MVDSLDTIQI DALPVGIVVI DTSSRKIVNI NRVAQKLIGA GASEIIGHSC HKFICPAAEG
NCPILDMGQS VDNAERQLLT SSGKLITILK TASRVTINGR EFLYEVLQDV TDPVNLRKQL
QIQVAERTKE LAEINSKLVQ EIKNHEKTER KLNELFTRYS MFFNNCNDGL TLIDFSGETP
PGKYIEVNKA FCQMVNYSRE ELLQLTPLDL TASDMKDYAL ENTKLVIESE YAVLRFPNVY
ITKDGRRLDC EINASFIYLS GREVAVVVYR DISETKRLEQ SLREAYEREL QAHAEVEDQL
NQRNYFMRAL VHELKTPLTP LLASSEYLVS ELSGSALLGY ARNMQNGAIN LNNKIDDLMN
LAKGEIGQLQ TDPEYASIRK VIGDCVDYLQ PQAQKMQKRI VLNFGSDIPL TLFDKKMIHQ
VVLNLLSNSL KFSRTGSEIC IEAVKSGDNI KISVRDQGTG IPKNKQQGIF TPYYRIKTKR
DRYGGLGLGL ALSKMIVELH RGEIWFTSEY GHGSTFYFTL PIRSEWDEDT DNRG
|
|---|
| |