| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_1305 |
|---|
| Symbol | |
|---|
| ID | 8658230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | + |
|---|
| Start bp | 1201618 |
|---|
| End bp | 1204107 |
|---|
| Gene Length | 2490 bp |
|---|
| Protein Length | 829 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | |
|---|
| Product | DEAD-like helicase |
|---|
| Protein accession | YP_003330732 |
|---|
| Protein GI | 270308674 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0305495 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATTG ATTTCAATAG ACTTAATAAT GAAACGGCAA ATAATCAAAT AATTCACCCG
CGCGAGATAT TTACGATTCT AACAAAAGAT AAACGTTATC AGTATCTAAG AGATGTACAA
AGTGAAGTAC TTGATTCTTG GTTCGCTCAA CGCATCAATA AAGATACTAT CCTCAAGATG
AACACAGGTA GCGGTAAAAC TATTGTAGGG TTATTAATTG CCCTTAGCTG CCTTAATGAA
GGATTTGGTC CTGCAGTTTA TGTTTCTCCC GATGATCATT TGGTTGATCA AGTTTTACAG
GAAGCTACCT ATCTAGGGAT TGAAACAACT GAAGACCCAA ATTCAATTTC ATTTAGGAGA
GGACAAGCTA TTCTGGTCAT TAATACTCAT AAATTATTTA ATGGCAAATC AGTATTTGGG
CTTTCTGATA GTAGTTCTCC TATAAATATA AGTACTTTAA TCATTGATGA TGTCCATGCT
TGTATTGAAA GTATCGAGCA ACAATTTACT TTAACAATTG ATTCTAAAAG TAACGGTTAT
AAAGAGTTAT TTAATTTATT TGAGATAGGT TTACAAAAAC AGTATCCAAC ATCTTTTCCT
GATCTTGTAG AAGGGGATCC TAATAAAAAC TTACAAGTCC CATATTGGTT ATGGCAAAAA
CATACCACCG ATATCATAAA AATATTAAAT AAGATTAAGA ATGATTCTTC CACACAGTTT
AAGTGGCCAC TTATCAAAGA CAATATACGT TTAGCAGATT GTATATTCGG TGGCAATCAA
GCTGAAATAT CACTCAGATG TATACCCATA GACACTATAC CGAGTTTTAT CAATGCAAAC
CGTCGTGTTT TTATGAGTGC TACACTTTTA GATGATAGTA TCTTGGTTTC TCATTTAGAT
GTTAAAAATG AGTCGATTTC AAATTTAATT ACACCCAAAA CTGCTAATGA TATAGGCGAT
CGAATTATAT TAATTCCACA AGAGATTAAT CCTTGTATAA GCGATGAGGA ATTAAAGACA
TTTTTTAAAA AATTATCAAT CAGTTATAAC GTAGTGGTAA TTGTACCTTC ACAGCATCGA
GCAAATTATT GGCAGGATGT AGCAGATAAA ACTTTATCTA GCGCCAATAT TTATAATGGC
ATTATCTCTC TAAAAAACAG ACATATTGGG CTTGTGGTTT TAATCAATAG ATATGACGGA
ATAGATCTAG CAGATGATGC ATGTAGGATT TTAGTTATTG ATGGACTTCC AGATATACGT
CGCCGGATAG ATAAGATAGA ACAAACCATT TTAGCAGGAA GCGATAAGGT AAACACTAAA
TTGATTCAGC GTATTGAACA AGGAATGGGA CGTGGTATTA GATCAAGAGC TGATCAGTGC
GCTGTATTTT TAATAGGCCA TAAACTAACT GATCAATTAT ATAGCAAGGG TGCAATAAAT
AAATTCTCTC CAGCCACCCA AGCCCAATTA AACTTATCTG ACCGAATTGC TGAACAATTA
CGCGGAAGTA GTTTAGACAA ATTGGAGGAC TTAATCAATT TATCTATTGA ACATGATCCA
CGCTGGGTAA AAGCAAGCAA AGAAGCCATT GTTCATTTAA AATATGAGCA AGCCTGCAAA
ATGGACCCTA TTATTCTTCA ACAACGATAC GCATTTAATG CCGCTACCAT GGGAAACTAT
GGAAAAGCGA TACAAGCAAT TCAGAGAGCT ATTGATAATG CTGATGAACC CAAAATTAAA
GGGTGGTTAT TACAACAGCT TGCGACCTAC ACTAATTTTT TGGATCCCGT ACGATCACAA
AGAATTCAAA AGTCTGCAAT CGAATCGAAT CCCCATGTAA TTCATCCAAT TGAAGGAGTA
AATTATACAA GATTAGGTAC TGTCCCTATT TCCCAATCAA AATCCTGTAG GGAATATGCT
TTGAGGTTTG AGAATTGCGA CAAATATCTA CTAGGAATGC ACGCAATAAT TGAAGACCTT
GTCTTTCTGC CAGAAACATC AGAGAAATTT GAAGAGGCTC TTAACAATGT GGCCCTCTCT
CTTGGATTTA TCGGTCAAAG GCCGGATGCA GAATATCATA AAGGGCCAGA TAATCTATGG
CAAATAAATA GCGAGAAGTT TTTAGTTATT GAGTGTAAAA ATGGCTCAAC AGACGATGAG
ATTATAAAAC GATACTGTGA TCAATTGAGT GGTCATATGA ATTGGTTTGA GGAAGAATAT
AGGAGTAATG CCATTGCAAC ACCAATTATT ATCCATCCAG TAAATGTTTT CTCTAAGGAT
TGTTCTCCTC ATCCAAAAAC ACGTGTATTA AATCAAGGTA AATTATCTGA ACTACGATGT
GCTCTTGAAG CTTTTTCCAA AGCAATCTCT TCTAATGAGA ATTTTGGCGA TATTAAAACC
ATTGAAGAAG CATTAAAGCA TTTTGATTTT ACACATGGAA ATTTTGTAAA TAAATATACT
TTGAGGTATG AAGTAAAGCA GGATAGATAA
|
|---|
| Protein sequence | MEIDFNRLNN ETANNQIIHP REIFTILTKD KRYQYLRDVQ SEVLDSWFAQ RINKDTILKM
NTGSGKTIVG LLIALSCLNE GFGPAVYVSP DDHLVDQVLQ EATYLGIETT EDPNSISFRR
GQAILVINTH KLFNGKSVFG LSDSSSPINI STLIIDDVHA CIESIEQQFT LTIDSKSNGY
KELFNLFEIG LQKQYPTSFP DLVEGDPNKN LQVPYWLWQK HTTDIIKILN KIKNDSSTQF
KWPLIKDNIR LADCIFGGNQ AEISLRCIPI DTIPSFINAN RRVFMSATLL DDSILVSHLD
VKNESISNLI TPKTANDIGD RIILIPQEIN PCISDEELKT FFKKLSISYN VVVIVPSQHR
ANYWQDVADK TLSSANIYNG IISLKNRHIG LVVLINRYDG IDLADDACRI LVIDGLPDIR
RRIDKIEQTI LAGSDKVNTK LIQRIEQGMG RGIRSRADQC AVFLIGHKLT DQLYSKGAIN
KFSPATQAQL NLSDRIAEQL RGSSLDKLED LINLSIEHDP RWVKASKEAI VHLKYEQACK
MDPIILQQRY AFNAATMGNY GKAIQAIQRA IDNADEPKIK GWLLQQLATY TNFLDPVRSQ
RIQKSAIESN PHVIHPIEGV NYTRLGTVPI SQSKSCREYA LRFENCDKYL LGMHAIIEDL
VFLPETSEKF EEALNNVALS LGFIGQRPDA EYHKGPDNLW QINSEKFLVI ECKNGSTDDE
IIKRYCDQLS GHMNWFEEEY RSNAIATPII IHPVNVFSKD CSPHPKTRVL NQGKLSELRC
ALEAFSKAIS SNENFGDIKT IEEALKHFDF THGNFVNKYT LRYEVKQDR
|
|---|
| |