| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_3955 |
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| Symbol | |
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| ID | 7260975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfitobacterium hafniense DCB-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011830 |
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| Strand | - |
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| Start bp | 4196584 |
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| End bp | 4199712 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643563876 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_002460404 |
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| Protein GI | 219669969 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCCTG AAAATCAGAT TGAGAGCACA TTTATTGACA TTTTAACCAT GAGAGAGAAC
CAATGGACCT ATCGCGGCGA TATTAAAACA GAATCCGAAC TTTGGGAAAA CCTGCGAGGG
CATATCAATC GGATTAATCT TGCCCGGCTG GATGGCGTGC TCCTTACAGA CAGCGAATTT
AAGCAAGTGA GAGATGAATT TAATCGTCTC ACCCAAACTC CATTTAAAGC TTCCCAATGG
TTGCGGGGTG AAAACGGCAT AGCGCAGATT TCCATAGAGC GAGATGAGCT TGCTAAAGGA
AACGTTGCCC TTACGCTCTT TAGCAATAAG GATATCGCCG GAGGGATATC CAGCTATGAG
GTAGTAAACC AAGTCGTTCC TGTTGTAGAG GGCAGAACGA CCCGGGGAGA TGTTACTTTG
CTCATCAACG GTTTGCCTGT CATACATATA GAACTTAAAA GCGAGCTTGC CAAAGATGGC
TATTGGCAAG CCTTCCAACA AATTGAAAGA TACGCTCAGT CGGGTTTTTT TGACGGAATT
TACTCCACTG TGCAGATTTT TGTGGTCAGC AACAAAGTTT CTACAAGGTA TTTTGCGCGA
CCGAGAGCAA ACAACGATTT TGAATCTGCC AAAAAGTTTT TGTTCAACTG GCGTGAACCG
GACAATGCCC CCATAGAGGA TTTATACGAC TTCACCAAAA AAGCTCTAAG CATCCCCATG
GCCCATGAGT TAATAAGCCG TTTCTCAATC CTAGTTGACG ATAAAAAAGG TCAAAAATTT
ATGATGGTAC TGCGCCCCTA TCAGATACAC GCCATAAAGA AGATCATGAA GCAAGCGTAC
AGTCATGAAG GAGGCTTCCT ATGGCACGCC ACCGGCTCAG GCAAAACGAT AACCAGTTTT
GTCGCAACCA AGCTATTGGC TCAATCAGCT ATTTCCGTTG CCCGCACCGT AATGATTGTT
GATCGCAAAG ACTTAGACAG CCAAACTAAA AATGAATTCA GTAAATTTGC TTCTGAGTAC
AATACAGGCC TTGCTTCAGG CAAGGGTGCA GATAATACGC TTATAGTAGG CATAGATAAT
AAGCGCGAGC TGGTGGAAAA TTTCCTCAGC CGGAAAAATA ACAACACGAT CATCATCACG
ACCATACAAA AATTAAGCCG TGCAATTCGT GAAAGCAAGA AGTCGGAAGT GAATAAATTT
CAGAAATTGA AGGGCGAACA TATTGTATTC ATTGTAGACG AGTGTCACAG GGCTGTTTCC
GACCAGGAAA TGAGGGAGAT AAAGAAAATA TTCCCGAAAT CCTCGTGGAT TGGTCTTACC
GGAACCCCTA TTTTCGAGAC GAATAAAAAG CAGGAAAATG GAACCTATGC CCGAACAACC
TTTGATCAAT ACGGGGAACT CCTTCATGCC TATACCACTA AAAACGCCAT GGAAGATAAA
TCGGTATTGG ATTTTCAGGT GGAATACCAT TCACTTTTGA GTGAAGAGGA AGAAGAGCGG
ATATATCTGA GAAAAATTAG AGCAAAGTAT CCAAACGACG ATCCGGAAGC CAAGCTAAAA
GCCATGCTTG ATGATATTGA AAAAGAGGAG TTATTGGAAT CTGCGGATTA CGAAAACGAC
GCTTATGTAG AAACCATGCT GAAAAAGATA TTTAAACATC AGTCAATCCT TGAAAAATTC
AGGGTGAGGG ACGGCATACC CACGATGAGC GCCATTCTTA CCACCCATTC CATAGCCCAG
GCAAAACGGA TATACCGTAA ATTAGTGGAT CTTAAAAAAG CCGGAAGCCT CATAACGGGC
AAACCGATAG ACGAAAGAAG AAGATTAAAT GACCCTGACT TTCCGCGTGT GGCAATTACC
TACTCTGTTA CAGAGAACCA GGATAAGATG ATTGCAGCGA ATAAAGAGTT AAGCGAAATC
ATGAAACAAT ACAACAGCTT GTTTGGTACG AACTATACGG ATATAGATTT GTACAACCAA
AACATAAATA ACCGTTTAGC CCGCAAAGAT GCCCAATATC AAAAGGACGG GCAATGGCTG
GATTTGGTTA TTGTAGTGGA TAGGCTTTTA ACGGGTTTTG ATGCGCCTAC TATTCAAACC
CTATATGTCG ACAGAGAACT GCGCTATCAG AAGCTGCTGC AAGCCTTTTC CCGCACGAAT
CGAACATGCT CCGGCAAGAG TATTGGCATG ATTGTCACCT TCCGAAAGCC AAATACGATG
GTCGAAAATG TCCGTGATGC CATCAAGCTG TTTTCAAACG AGGAAAGAGA TTGGGAGAAA
TTGGTGCCGA AGCAGTATAG GGAGGTTAAG CAAAACCTCA AAGCTGCTTA CAAAAAATTC
AGGGAAGCCA ACAGGGAACT GATTGAAAAT CCAACAGACA TCAAAAAACA GCTTCAGGCC
ATAAAGGCTT TTCAAATGAT GAAGAATTTA GGAGAGTCGA TAAAAAGCTA TGAGGAATAC
GAGACAGATT TCGCAAACCT GTCCGATATC GTCCAAACCG TTGCCGATGA AATGGGTCAT
ATCGAAAACC TAAAGGGCGA GGTTCGGGAA GCGTTGACAG AGGCCAGCAT CCATGACGAT
CCGTTGCCGG AACTCCTTGA AATAGAGTTT TCATCGGATC AGCGTGCAAC CCTCGAAGAG
AAGATTGACA GTTATTATAT TAGCCAGCTT CTCAAGGATA TAAAAGACGA GAAAAGCAAA
CAAAAGTTTA ACGAAATTAT CAAGAACAAG GCCCCCATTG TCAAAGCGGT TTACGAGGAG
GCTTTAGAAT CGCTTGCGGA CGATCAGAAA ATTGTCAATA GCGTGGACAG CCATTTTAGA
TACGCTATCG GGGAGATAAT AAGGGAAACC TCTTCAGTAT TGAAGGTACC TGAGGAGGAC
TTAAAGATAA GCTTTAACGA ATATCGGCGG GATAAACCGG AGGTTCCCTA TATCAACATG
ATTATTGACA ATTCCACCAT AACCCGCGAG GAGTTTGAGC AAATCTTTTA CAAAAAGTTT
AGAGAACGCC GCCGAACGAT AGAGAACTAT TGGAAAAAGG AAATGAACAG CAAACTATTG
CCTTTAAAGG ATGAACTCGC AAATTTTGAC AATGAACTAA AAAAATGGAG GGACCCCAAC
AATGAGTGA
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| Protein sequence | MTPENQIEST FIDILTMREN QWTYRGDIKT ESELWENLRG HINRINLARL DGVLLTDSEF
KQVRDEFNRL TQTPFKASQW LRGENGIAQI SIERDELAKG NVALTLFSNK DIAGGISSYE
VVNQVVPVVE GRTTRGDVTL LINGLPVIHI ELKSELAKDG YWQAFQQIER YAQSGFFDGI
YSTVQIFVVS NKVSTRYFAR PRANNDFESA KKFLFNWREP DNAPIEDLYD FTKKALSIPM
AHELISRFSI LVDDKKGQKF MMVLRPYQIH AIKKIMKQAY SHEGGFLWHA TGSGKTITSF
VATKLLAQSA ISVARTVMIV DRKDLDSQTK NEFSKFASEY NTGLASGKGA DNTLIVGIDN
KRELVENFLS RKNNNTIIIT TIQKLSRAIR ESKKSEVNKF QKLKGEHIVF IVDECHRAVS
DQEMREIKKI FPKSSWIGLT GTPIFETNKK QENGTYARTT FDQYGELLHA YTTKNAMEDK
SVLDFQVEYH SLLSEEEEER IYLRKIRAKY PNDDPEAKLK AMLDDIEKEE LLESADYEND
AYVETMLKKI FKHQSILEKF RVRDGIPTMS AILTTHSIAQ AKRIYRKLVD LKKAGSLITG
KPIDERRRLN DPDFPRVAIT YSVTENQDKM IAANKELSEI MKQYNSLFGT NYTDIDLYNQ
NINNRLARKD AQYQKDGQWL DLVIVVDRLL TGFDAPTIQT LYVDRELRYQ KLLQAFSRTN
RTCSGKSIGM IVTFRKPNTM VENVRDAIKL FSNEERDWEK LVPKQYREVK QNLKAAYKKF
REANRELIEN PTDIKKQLQA IKAFQMMKNL GESIKSYEEY ETDFANLSDI VQTVADEMGH
IENLKGEVRE ALTEASIHDD PLPELLEIEF SSDQRATLEE KIDSYYISQL LKDIKDEKSK
QKFNEIIKNK APIVKAVYEE ALESLADDQK IVNSVDSHFR YAIGEIIRET SSVLKVPEED
LKISFNEYRR DKPEVPYINM IIDNSTITRE EFEQIFYKKF RERRRTIENY WKKEMNSKLL
PLKDELANFD NELKKWRDPN NE
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