Gene Dhaf_1966 details

Gene Information

• Locus tag: Dhaf_1966
• ID: 7258935
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: +
• Start bp: 2118785
• End bp: 2120671
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 643561862
• Product: putative sigma54 specific transcriptional regulator
• Protein accession: YP_002458442
• Protein GI: 219668007
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCAGAA TTGTCTATAC TATGACACTT GGCCATAATC GGGATATTAT CAATCAATTG 
ATCCATGCCA AAGAGTCAAA GGATGTCTCT GTGGAAGTGC TGGAAACGGC CAGCCCTCAG 
GCGTTAATGG AGTATGATCT GGAAAACACC ATTGTCATTG CCCGCGGCAT CTATTACTTG 
ACCCTCAGTA AAAGCTTTAA GCATGCCCGG GTGATTGAGC TGGCCGTCAC CGGGTATGAT 
ATTCTGCGGG GAATTGTGGA GTGTAAAAAC AACTATCAGG CTCAAAAAAT TGCCATCATC 
CTATCGGAAA CCATTCAGGT CGAGAAGAGC TTCATTGAGG ACATTTTGGA TGTACAGCTG 
ACGGTTTTCC CGGTCAAAGA CTATGACCAT GTGGATGAAG TCTTTAACTA TGTAAAGGGC 
CTGGGATTTG ATGCCGTCCT GGGCGGGTTT ACGGTTTTTC GCATGGCCCA GAAAGAGCGA 
ATCAATTCTG TAGCCATTAC CATGGGATAT GAGGCCAACT ATTTAGCGAT TACCGAAGCC 
TTTAGTGTGG CCAAAGCCAT TATTAAAGAG CGCAGGAAAA ATGAGCTTTT CCGAATTATT 
CTGGAAAATA CGGATGGAGC TGTCCTCGCT TACGATAATC AAGGATTGGT TATGGCCTAT 
AACCAAGGGA TCTATGATAT TTTGGATCTC CCCGCCAATG AGATCCTTAC GGGGAAAGAG 
CTCTCTGTTT TTTTGCCCCA ATTTAAGGAA GCCCAACTCA CTGAAGAAAG TTTCTCCGCC 
AATGAAATCA TTACTATCAA CAACCGCAAG GTCGTGATCA ACAAAAGAAG TATTATCATT 
GAACACAATA ACCTGGGCAC GGTCTTAATG CTGCAAAATG TGGACGCGTT GCAAAAAACA 
GAGATCGATG TGCGCCAGAA ATTAAACAAG AAAGGGTTAG CGGCCAAGTA CACCTTTGAT 
GCGATCATCG GTCAGAGTGA GGTGGTCCAG AAAATCATCC GCGTAGCCCA AAAATATGCT 
GTTGCCAACT CCAATGTGCT GATTATCGGC GAAACTGGGA CAGGGAAAAA GCTTTTTGCG 
CAAAGTATTC ATAACCACAG CATGCGGCAA AACCAGCCCT TTGTGGCCAT CAATTGCGCA 
GCTCTCCCCG AGCAGCTGCT GGAAAGCGAA CTTTTTGGCT ATGTGGCAGG AGCTTTTACC 
GGAGCTGCCA AAGGAGGGAA GGTGGGCCTT TTTGAATTGG CCCATAAAGG GACCCTCTTT 
CTGGATGAAA TTGCCGAAAT GCCCATGGGT TTGCAGGCGA AACTCCTGCG TGTCCTCCAG 
GAACGGGAAA TCCGTAAGCT GGGAGATGAT AAGATTATCC CCATCGATGT ACGGATTATC 
GCCGCTACCA ACGAGGATTT GCGCTTAAAA GTGCAAGAAG GTAAATTCCG CCAGGACCTT 
CTCTACCGTA TCGATGTGTT GAGTTTAAGC ATTCCACCCT TGCGGGAGCG CCGCGAAGAC 
ATTAAGGCCA TTGCTAAAAC CTTTTTGGCT GAATTTTCCC AAAACCGTCA GCAGTCCATC 
CGCTTAAGTC AGGAAGGGCT CATGGAACTG ATGCGCTATG ACTGGCCGGG CAATATCCGG 
GAAATGCGCA ATGTCTGTGA ACGGCTATCC GTGCTCTCTG AGAACAAAAC CAGCGGAGTT 
CACGAAGTAA AAGAAGTATT GAATATAAAA AAAGAGCCCC CTTTGAATCT GATCACTCAG 
ACCGCGGCCA TGCAAAATTC GTCTCATCAG GAAAGACCGA ACAAAATGAC CCAGCAGCAA 
ATGGCAGAAA TGCTGGGAAT CAGCCGCACG ACATTATGGC GCAGAAAACA AAGACAGGAA 
ATGAAGGCCG ATGGGGAAAA TCTTTAA 

 

Protein sequence

MIRIVYTMTL GHNRDIINQL IHAKESKDVS VEVLETASPQ ALMEYDLENT IVIARGIYYL 
TLSKSFKHAR VIELAVTGYD ILRGIVECKN NYQAQKIAII LSETIQVEKS FIEDILDVQL 
TVFPVKDYDH VDEVFNYVKG LGFDAVLGGF TVFRMAQKER INSVAITMGY EANYLAITEA 
FSVAKAIIKE RRKNELFRII LENTDGAVLA YDNQGLVMAY NQGIYDILDL PANEILTGKE 
LSVFLPQFKE AQLTEESFSA NEIITINNRK VVINKRSIII EHNNLGTVLM LQNVDALQKT 
EIDVRQKLNK KGLAAKYTFD AIIGQSEVVQ KIIRVAQKYA VANSNVLIIG ETGTGKKLFA 
QSIHNHSMRQ NQPFVAINCA ALPEQLLESE LFGYVAGAFT GAAKGGKVGL FELAHKGTLF 
LDEIAEMPMG LQAKLLRVLQ EREIRKLGDD KIIPIDVRII AATNEDLRLK VQEGKFRQDL 
LYRIDVLSLS IPPLRERRED IKAIAKTFLA EFSQNRQQSI RLSQEGLMEL MRYDWPGNIR 
EMRNVCERLS VLSENKTSGV HEVKEVLNIK KEPPLNLITQ TAAMQNSSHQ ERPNKMTQQQ 
MAEMLGISRT TLWRRKQRQE MKADGENL