Gene Dfer_5801 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5801 
Symbol 
ID8229417 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6961804 
End bp6963081 
Gene Length1278 bp 
Protein Length425 aa 
Translation table11 
GC content49% 
IMG OID644933646 
ProductABC-2 type transporter 
Protein accessionYP_003090154 
Protein GI255039533 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.552117 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.846192 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTAAAT TATTTTCATC ATTACGCAAA GAGCTGCTGC TGCTTATCAA TGATAAAGTG 
GGGCTTGCTT TGATGTTCGT AATGCCGCTG CTGCTGGTGT TCATCATTAC CATTATCCAG
GACAGCGCTT ATAAAATGGT GAATGAGAAC CAGATTCCGC TGCTCGTCGT GAACCAGGAC
AAGGGCCAGG AAGGCCGGAA GCTCGTGAAT TTGCTCAAAA AATCGGGGCT TTTTAAAATC
GATTCGCAGG ATGCTATCAA GCAGGAAGCA TTGAAAGCGG AGCTGTTGGC GAGAGGAAAA
ATGATTGCAT TGTACATTCC AGCCACGTTT TCGGCAGGGC TTGAAAGCAA TGCGGAAGAT
GTGAGCGGCA TTCTGATGGA CGACCTCGGT TTGGAGCACG ATACTACCGC CCGCGAAAAG
TTTTCCATGC CGCGGCTTGC CTTTTACAAC GACCCTGTTT TACAGGAAAA TTACAGCTAT
TCGATCATGA GCGTGATCCA GTCGTACATG AGCGTGATCG AAAATTCGCT GATGATCGAC
CGGATGTATG CCAATATGGA CATTCCCGAA CGGTCCGAAA AGCTCAAAGA CAGGATGATT
TCCAACCGCG TGGGGATCGA CCAGATCGTG GCGAGCAACA ACAATTCCAC GGCCATTCCC
AATTCCACGC AGCATAATGT GCCCGCCTGG ACGATTTTCG CCATGTTTTT CATGGTCGTG
TCGCTTGGGA GCAACATTGT CAAGGAGCGT ATTAACGGAA GTTTTCTCCG GTTGAAAACC
ATGCCGACCA CATTCATGGT CGTGATGTTT AGTAAAATGG CCATTTACGT GGTGGTAGCG
GCCTTGCAGG TAGCAGCCAC GTTCTCGATG GGCGTCTGGA TTTTACCCAA ACTGGGCCTG
CCCAAACTCA CCGTGCCCGA CAACATCATC GCCACCATTG CCGTGATTTT CATCAGCAGT
ATGGCCGCCG TAAGTTATGC TTTAATGATC GGCGCATTTG CCAAAACCGA ACAGCAGGCC
AATGGTTTCG GGGCCATTTC GATCATCATA TTCGGCGCGA TAGGCGGCAT TCTGGTGCCT
ACGTTCGTGA TGCCGGGTTT TATGCAGTTT TTCAGCAACT TTTCGCCGCT TCATTGGTGC
CTCGACGGTT TTTACGTGCT TTTCCTCAAA GGCGGCAGCT GGCAGGATTT GCGCATGGTG
TTCGCTTTTC TGGGCATTTT CATCGTGTTT TGTCAATTGG CCACATATTT TAAGTTGCGG
TTGGAAAGAA TTATTTAA
 
Protein sequence
MFKLFSSLRK ELLLLINDKV GLALMFVMPL LLVFIITIIQ DSAYKMVNEN QIPLLVVNQD 
KGQEGRKLVN LLKKSGLFKI DSQDAIKQEA LKAELLARGK MIALYIPATF SAGLESNAED
VSGILMDDLG LEHDTTAREK FSMPRLAFYN DPVLQENYSY SIMSVIQSYM SVIENSLMID
RMYANMDIPE RSEKLKDRMI SNRVGIDQIV ASNNNSTAIP NSTQHNVPAW TIFAMFFMVV
SLGSNIVKER INGSFLRLKT MPTTFMVVMF SKMAIYVVVA ALQVAATFSM GVWILPKLGL
PKLTVPDNII ATIAVIFISS MAAVSYALMI GAFAKTEQQA NGFGAISIII FGAIGGILVP
TFVMPGFMQF FSNFSPLHWC LDGFYVLFLK GGSWQDLRMV FAFLGIFIVF CQLATYFKLR
LERII