| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5705 |
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| Symbol | |
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| ID | 8229321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 6856752 |
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| End bp | 6859787 |
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| Gene Length | 3036 bp |
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| Protein Length | 1011 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644933551 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003090059 |
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| Protein GI | 255039438 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.091818 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGTGA CGGCCGTTTG TGGCCTCCAT GCGATTGCCG CAGCCGAGAT ACCGGTTCCC
GAAGGCCAGC CCCGAAAACA TGTTGAAACC AACATGACCC GCATGCAGGA AGTAACGCTT
ACGGGCAAAG TGGTCACGGA AGGTTCGTCC GAAGGACTGC CCGGCGTAAC CGTGGTCATC
TCCGACGTAG ATGGCGGAAA CAAGCAAGGC GCAACGACTA ATGAATCCGG CGTTTTCAGC
TTTGCCAATC TCCAAACCGG CACACGTTAT AACCTCGAAT TCAGCTATAT CGGTTTTGAA
AAGCAGTCTT TGAAAGACTT TTTGCTCACG GAAAGCAATG CGGCTTCCAT TGAAGTCAAA
CTGAAAGAAT CCGCGTCCAA CCTGAGCGAG GTGGTGGTAG TCGGCTACGG CAGCACCACC
AAAAAAGACA TTACCGGCTC GGTGAAGTCG CTGAAAAGCG CCGAGTTTAA CCAAGGGATC
ATCAACTCGC CCGAGCAATT GCTGCAAGGC AAGGTATCGG GTGTGAACAT TACCTCGGCA
ACGGGCGAGC CCGGCGGCAA GACGAACATC ACGGTACGCG GTCCGGGCGG TGTGCGCACG
GGCAGCACGC CGTTGTTCGT CGTCGACGGG ATGGCGCTGG ATAACAGCGG CACCGGCGGC
GATACCAACC CGCTGAACTT CCTCAACCCG CAGGACATTG AGTCGATCGA CGTACTGAAA
GATGCCTCGG CAACAGCCAT TTACGGTGCT CGCGGTGCGA ACGGGGTAAT CCTGATCACG
ACCAAAAAAG GCAAGTCGGG CCAGGCAGCA GTAACCTATT CGGGTAGCCT GGGCATTTCT
AATGTAGCGC GGCCAATGGA CGTGCTTTCG GGACCGGAAT TCCTCGCAGA AGCGGCTAAA
CTGGGAGCCA CCGTGGCCGA CGGCAAGGCG GATACCGACT GGCAGAAGGA GATTTTCCGC
ACCGCTACCA CGCATAACCA CAACATTTCC ATCGGCGGAG GCAGCGAAAA AATGACCTAT
TACGCCTCAT TCGGCTCGCA AAAGCAACAG GGTATCCTCA AAAACAGCCA GCAAAACCGC
TACACCGGTC GCGTGAACCT TTCGCAAAAG CTGTTTGAAG ACCGCGTGAC GCTGGACGTG
AACCTGAATG CAACCAATAC GAAAAACAAC CGTCCGAATA TCCCGAACGT AATTGGTAGC
GCACTCACGA TCAACCCGAC CTATTCGCCG TTCGACGCGA ACGGCGAGAT CGCCCGTTAT
GAGGATTTCA CGAACCCGTT GTTCGCATTG AACCAATATA AGGAAGTGCT CACGACCAAC
CGCGTGCTTG CCAGCATTTC GCCTTCGGTG AAAATCATCG ATGGATTGGT TTACAAGCTG
AACTTCGGTA TAGACAATTC CACGGCTACG CAGGACAAAC AGCTGTTACC CAGCACAATC
CCGGCGGAAA TCGGCCGTTT GGAAAACTAC GGCCTGCGCA ACACCAACAA GCTGATCGAG
AACTACCTGA CCTACACGCT GAACTCGAAA ATGCACAGTT TGAATGCATT GATAGGCCAT
TCGTACCAGC ACATTTTTAT CCAGAGCCGG AATTTCAGCA TTAACAAATT CCCGATCTCG
GACATCGAGC CGATTTACAA CCCTGGGCTA GGCCAGGACC TTTCACTGGT GCTGAACCAG
CCGGGCGGGT TCGCGACGAT CAATGAGCTG CAATCGTTCT TCGGCCGCGC GAGCTACGGT
TTCAAAGACA AATACCTCGT TACCGCCACA TTGCGTATCG ACGGTTCGTC GAAATTCGGA
TCGAACAACA AATACGGATC ATTCCCCTCA TTCTCATTGG GTTGGAGGAT TTCCGAAGAG
CCCTTCATGA AATCGTCGCC TTTCTCGGAA CTGAAACTCC GTGCAGGCTG GGGATCGACG
GGTAACCAGG AAATTCCTTC GAAAATCACC CAGGCGCGCT TTACCTCGGT CGTTTCCGGA
TCGGCCAGTT ATCCGCTTGA TGGCGGCAAC ACCTATCCAG GAGGTACCAC GTACACGCGT
CTGGCAAACC CCAACATTCA ATGGGAAGTG TCTAAGCAAA CCGACGTTGG TTTGGATTTC
GGCTTGTTCA AAGGTGCTTT GAGCGGGGAA GTCGATTATT TCAGAAAGGT TTCCGAAAAA
ATGCTGCTGG AAGTGATCCC TGCCGACCCG GTGCAGCCAG CCGGCACATT CTGGACCAAC
GTGCCTGACA TGCAGATCAT TAACCAGGGT ATGGAAGTAG ATCTGAACTA CCGCAATGCA
TTGGAAAACG GGCTGCGGTA TTCAGTTGGC GGTAATATCA CTTTCATCAA AAACCGCGTC
GAAAACTCTC CTTACTCCGT GATTCCATCG GGTTCCGCAC AGGGTTCCGG GCTTACTTCG
GCGACCATCA ACGGCTATAT CAACGGCGAG GCGATCGGTT CGTTCTACCT GAAAGACTTC
ATCGGTTTTG ACGAAAACGG CATCAGCAAA TTCCGTGACG TGGATGGAAA CGGCATCGTG
AACGACGCCG ACCGGGTGGT GGCCGGTACT GCATTGCCTA CCCGCATGTA CAATTTCAAT
GGTAATGTGA GTTTCAAGGG CTTCGATCTT TCGGCCAATT TCAATGGCGT TGCCGGCAAC
AAAGTGTACG ACAACACAGC GAACTCGAAT TTTTACAAAC TCAAACTTTC CAAAGGCGTG
AACGTGACGC CGGAAGCGCT TTCGGAACCA TCGGAATCGG TGAACAACGC GGCATTGGTG
TCGACCAGGT ATCTCAAAAG CGGGGCGTTC CTGAGATTGA ACAACCTGGT GCTTGGCTAT
AACCTCAACA CGGCGAAGCT GGGCATCAAC CGGTGGGTAC AAACGGCCCG TATTTCGGTA
ACCGGCCAAA ACCTGGCTGT ATGGACGAAA TACAACGGCT TCGATCCAGA GGTGAGCAAC
GACCGCTCTA TCGCAGGCAT TACCTCCTAC GGTATCGACT ACCTGAGCTA TCCGAAAGCA
AGAACCGTCA TATTCTCGAT CAATCTTGGA TTTTAA
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| Protein sequence | MQVTAVCGLH AIAAAEIPVP EGQPRKHVET NMTRMQEVTL TGKVVTEGSS EGLPGVTVVI
SDVDGGNKQG ATTNESGVFS FANLQTGTRY NLEFSYIGFE KQSLKDFLLT ESNAASIEVK
LKESASNLSE VVVVGYGSTT KKDITGSVKS LKSAEFNQGI INSPEQLLQG KVSGVNITSA
TGEPGGKTNI TVRGPGGVRT GSTPLFVVDG MALDNSGTGG DTNPLNFLNP QDIESIDVLK
DASATAIYGA RGANGVILIT TKKGKSGQAA VTYSGSLGIS NVARPMDVLS GPEFLAEAAK
LGATVADGKA DTDWQKEIFR TATTHNHNIS IGGGSEKMTY YASFGSQKQQ GILKNSQQNR
YTGRVNLSQK LFEDRVTLDV NLNATNTKNN RPNIPNVIGS ALTINPTYSP FDANGEIARY
EDFTNPLFAL NQYKEVLTTN RVLASISPSV KIIDGLVYKL NFGIDNSTAT QDKQLLPSTI
PAEIGRLENY GLRNTNKLIE NYLTYTLNSK MHSLNALIGH SYQHIFIQSR NFSINKFPIS
DIEPIYNPGL GQDLSLVLNQ PGGFATINEL QSFFGRASYG FKDKYLVTAT LRIDGSSKFG
SNNKYGSFPS FSLGWRISEE PFMKSSPFSE LKLRAGWGST GNQEIPSKIT QARFTSVVSG
SASYPLDGGN TYPGGTTYTR LANPNIQWEV SKQTDVGLDF GLFKGALSGE VDYFRKVSEK
MLLEVIPADP VQPAGTFWTN VPDMQIINQG MEVDLNYRNA LENGLRYSVG GNITFIKNRV
ENSPYSVIPS GSAQGSGLTS ATINGYINGE AIGSFYLKDF IGFDENGISK FRDVDGNGIV
NDADRVVAGT ALPTRMYNFN GNVSFKGFDL SANFNGVAGN KVYDNTANSN FYKLKLSKGV
NVTPEALSEP SESVNNAALV STRYLKSGAF LRLNNLVLGY NLNTAKLGIN RWVQTARISV
TGQNLAVWTK YNGFDPEVSN DRSIAGITSY GIDYLSYPKA RTVIFSINLG F
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