| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5673 |
|---|
| Symbol | |
|---|
| ID | 8229289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 6815508 |
|---|
| End bp | 6817175 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644933520 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003090028 |
|---|
| Protein GI | 255039407 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0033424 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA TAAGAAAATC GATTGCGGTG TGCGGTATGG CGGCATTGAT GCTGGCAGGG
CAGGGGTGTA AGGATGTGCT CGACGAGAAC ATTATCTCGG GCGTAGGCAA CGATTACCTC
AACACCGCCA AAGGTTTCGA GGACGGTGTG AAAGCAGCCT ACTCGTCACT GCGCTTCTAC
TACGCTACCC AGCAAGGCCT GACCATGAGC GAATTCGGCA CCGACATTTA CGCAACCGGC
GCGGATGGCG GCTACAAGGG TTTCCATTTT TATGATGGCC AGCTAAACCC GACCGTCGAT
TACCTGGCAA CGACCTGGGA TGAACTCTAC AAAGGCATCA ACACATGTAA TGCAATCATC
GAGCGTGCTC CGAATGTGAC GGGCATTGCC GATAACGTGA AGAAGCTTCG CGTGGCGGAA
GCCAAGTTTT TGCGCGGTCA TTACTATTAC ATCCTGCACC AGCAATATGG CGGCGTGGAC
CTGCGGTTGA CGGAAACACT GCTTCCGACC AAGGAAACCA AGCGCGCTAC CGATGCGGAA
ATGTATGCGG CGATCATCAA GGACCTGAGC GAAGCCGTGA CCGACCTGGA AGCCAAAGCG
CAGTCCAGCG ACTATGGCCG TGCCACCAAG CCGCACGCTC AGGCGATTTT GGCGAAAGTG
TACCTGGCAA AAGCCTATTC CAGCGAAAAA GCGGCTGACG ATTTTACCAA AGCAGCCGAC
CTTCTGAAAG AAGTTTCTAC CAAATATGGC TACAAATTGC TCGACGATTT CGCAGCTGTA
TTTGATGAAA ACAATCAGAA CCATTCCGAG GTAGTATTTG CGGTACAGTA CACAACCGAC
GCATTGACCA ACGGAACGGG TAACAGCTTG CACCTCTACT TCGGGATGCA ATATGACGTG
CAGCCGGGCA TGAAGCGCGA CACCTACTGG GGCCGCCCTT TCAAACGCCT GAGACCGACG
GAATACCTGC TGAACACCGT GTTCGCCGAC CGTGTGAACG ACTCGCGTTA CAAAAAGACA
TTCCGCGACA CCTGGCTGTC CAACAACCCG GGCACTTACA ATGCGGCGTC ATTCGATGAT
TCCAAAACAA AAGTGACATT CGCGGCGGGC GACACCACTA TTTACATTCC TGGATACGAA
ATGACGAAGG AAGAGCGTGC GAAAAAGCCG TATCAGGTAT TGGTTCCAAG CAAGTATTCG
GAAGCGTTGT TCCCGACGTT GCAGAAATTC TTTGATTCGA AACGTCCCGA CATGACCTAC
GAGCCGGGAA GCCGGGATTA TTACGTGGTG CGTCTGGCGG ACGTTTACCT GCTGCTTGCC
GAGGCATTGC TGCAATCGGG TGATAAAGCG GGTGCCGCCG AAGCGCTGAA CATGGTAAGA
TACCGCGCCG GATGGCCAGG CAAGAAGGAT AAGATGGCGA TTGCGGCCAA GGACATTACG
ATGGAGACGA TTATTGAGGA GCGTGCACGG GAACTGGCCG GCGAACAAAC CCGCTGGCTG
GACCTGAAAC GCTGGGGACT GCTCGTCGAA AGGGTGAAAA AATACAACCC GCAGGCGTCG
GCTATCCAGG ACTACCACGC CGTGAGACCG ATCCCGCAAA CGCAGATCGA CCGGAGCGCC
AAAACATCGG ATGGCAAGTC GGTGTTCCCG CAGAACCCGG GATATTAA
|
|---|
| Protein sequence | MKNIRKSIAV CGMAALMLAG QGCKDVLDEN IISGVGNDYL NTAKGFEDGV KAAYSSLRFY
YATQQGLTMS EFGTDIYATG ADGGYKGFHF YDGQLNPTVD YLATTWDELY KGINTCNAII
ERAPNVTGIA DNVKKLRVAE AKFLRGHYYY ILHQQYGGVD LRLTETLLPT KETKRATDAE
MYAAIIKDLS EAVTDLEAKA QSSDYGRATK PHAQAILAKV YLAKAYSSEK AADDFTKAAD
LLKEVSTKYG YKLLDDFAAV FDENNQNHSE VVFAVQYTTD ALTNGTGNSL HLYFGMQYDV
QPGMKRDTYW GRPFKRLRPT EYLLNTVFAD RVNDSRYKKT FRDTWLSNNP GTYNAASFDD
SKTKVTFAAG DTTIYIPGYE MTKEERAKKP YQVLVPSKYS EALFPTLQKF FDSKRPDMTY
EPGSRDYYVV RLADVYLLLA EALLQSGDKA GAAEALNMVR YRAGWPGKKD KMAIAAKDIT
METIIEERAR ELAGEQTRWL DLKRWGLLVE RVKKYNPQAS AIQDYHAVRP IPQTQIDRSA
KTSDGKSVFP QNPGY
|
|---|
| |