Gene Dfer_5138 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5138 
Symbol 
ID8228745 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6206870 
End bp6208117 
Gene Length1248 bp 
Protein Length415 aa 
Translation table11 
GC content54% 
IMG OID644932986 
ProductChorismate binding-like protein 
Protein accessionYP_003089503 
Protein GI255038882 
COG category[H] Coenzyme transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1169] Isochorismate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTATCAG TACAAACCGA CACCAGGATT TCAATATTTG AGGGATTACA GATTCAGGAG 
CTTTGGCAGG CATCCAAAAT TTTGGGCTTC CCCTCGGCGC TTTGGCGCCT GCCCCATACC
AACGAAATCA AACTGCTTAT TTCGGTCCGC GACGGCATCC GCAAATGCCT GCCGGAGCTC
GAAAAAATGA GCCCTGGCTT TGTAATGAGC ACATTCTACT GGGAATGCGA GCAAGAAGTG
CTGTTCCTGG AAGGCGATAT TATCCTCACA TTTTCGGAAG ACAACCGGAT TACCAATCAC
GACAACAAGC TCGGCGAAGA GCATACGGAA GTCAAAAGAC TTGTTCAGCT GGCCGAATCG
CTGCAAGCAG AACAAGCGGC GGATGAATTA CCCGCCGGCC AGCTTCAACC AGTAACCGGC
CCGCTCGACG CCAAATCCCG GTTTGAGCGG ACGGTAGAAC TTGCCGTTGC CGCCATTCGC
CAGAACCAGT TCAAGAAAGT GGTCCTTTCG CGCACCAAAG ACCTTGCCTA TACCGACGGC
TTTCAGCCAG CGCAGGCATT TCAGAAACTC GTAAAAGCTT ACCCGCACGC ATTCGTGTCG
CTGGTGAACC TGCCTGAGGA AAACGAAATG TGGCTCGGCG CCAGCCCCGA ACTGCTCGTG
GAGCAATTAT CGGACGGCAC GTTCAAAACG ATGTCCCTCG CAGGCACGCA GGGCGCGCGC
GACGCCGCCG GTGCGCTCAT ACCCAAGTAC GACATCCGAT GGGGCGAGAA AGAGATTGAA
GAGCAGGCAC TTGTGAGTCG ATATATTATT GAGTGTTTCA AAAAAATACG CCTGCGCGAA
TACCTCGAAA CGGGGCCTAA AACGGTGCTG GCGGGGAATC TTTACCACCT CAGAACGGTG
TTCGAGGTGG ATACCGTGGC GCTTCATTTC CCCGAGCTTG CTTCGGTCAT GCTGAAATTG
CTGCATCCCA CTTCTGCCAT CTGCGGCGTC CCCAAAGCGC CCAGCCTGCA ATTTATCAAC
GACGTGGAAG GGTACAACCG CTCCTTTTAC AGCGGATTCC TCGGTCCGGC ACAGGTGGGC
GGCGATACCA ACCTGTTCGT AAACCTCCGC ACGGTGCGGT TCAAAGAGGG CATTGCCACG
TTTTTCGCAG GCGCCGGCAT CACCGAAGAC TCTGTGCCTG AGCTCGAATG GTTCGAAACA
GAGCTCAAAT GCGACACTTT GCTCAAAGTG ATCGGAAGTT CCTTCTAA
 
Protein sequence
MLSVQTDTRI SIFEGLQIQE LWQASKILGF PSALWRLPHT NEIKLLISVR DGIRKCLPEL 
EKMSPGFVMS TFYWECEQEV LFLEGDIILT FSEDNRITNH DNKLGEEHTE VKRLVQLAES
LQAEQAADEL PAGQLQPVTG PLDAKSRFER TVELAVAAIR QNQFKKVVLS RTKDLAYTDG
FQPAQAFQKL VKAYPHAFVS LVNLPEENEM WLGASPELLV EQLSDGTFKT MSLAGTQGAR
DAAGALIPKY DIRWGEKEIE EQALVSRYII ECFKKIRLRE YLETGPKTVL AGNLYHLRTV
FEVDTVALHF PELASVMLKL LHPTSAICGV PKAPSLQFIN DVEGYNRSFY SGFLGPAQVG
GDTNLFVNLR TVRFKEGIAT FFAGAGITED SVPELEWFET ELKCDTLLKV IGSSF