| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4988 |
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| Symbol | |
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| ID | 8228594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 6038060 |
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| End bp | 6040534 |
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| Gene Length | 2475 bp |
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| Protein Length | 824 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644932836 |
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| Product | putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase |
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| Protein accession | YP_003089353 |
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| Protein GI | 255038732 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0787] Alanine racemase |
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| TIGRFAM ID | [TIGR00492] alanine racemase
[TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.259968 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCTTA CTGTCAATAC ATCCCCCATT GTAACCACAC AAGCCCAGTA CATCCTGACC
GACAGCCGCC AGGTTTCGTT TCCCGGCCAG AGTATCTTTT TTGCCATTAA AGGCGAGCGC
CACGACGGCC ACCGCTTCCT GCCCGAACTG TACGCGGCGG GCGTGCGGGA GTTTGTCGTA
GAAGAAGCCG CATTCACGGG CGCGCTGCGC GAAACAGCCG CGACGTGGGA CGACGCGCAG
ATCTGGGTGG TTTCGTCGAG CATCCGGGCA TTGCAGCAAT TGGTGGCTTC TAAAAGAAAG
CAATTCGACA TTCCGGTGGT GGGCATTGCG GGAAGTAACG GCAAAACGAT TGTGAAAGAA
TGGCTCGTGC AGCTGCTGTC GCCCGGCCGG AGCATTGTGG CGAGTCCCAA AAGCTACAAT
TCGCAGATCG GCGTGCCGCT TTCGGTGTGG AACCTCAGCA AAGAGCATTC GCTGGCAATA
TTTGAGGCGG GTATTTCCAA AGCACACGAA ATGGAGTATT TGCAGCCGGT GATGCAGCCT
ACAATCGGTA TCTTTACCAA TATCGGCCCG GCTCACGACG ACGGTTTCCG AAGCCGGAAG
CAGAAAATTA CCGAGAAATT GCGCCTTTTC ACCAAGGTTA AAAAACTCAT TTACAGAAAA
GATTACCACG AAATCGACGA GGAGATCAGC CTGATACTGA AACCGGTGAA TGCATTCCTC
GAAACGCTGA GCTGGGGAAG CAACTACTCC GGCTCGCACG TGCAGGTGAC TTTCAATCCT
CAAAAAGATA AAACCGTGAT TTCCCTCACC GGAAAACTCG GCAACCATAC ATTCGAAACC
GGCTTCCGAG ACGACGCCTC GCTCGAAAAC CTCACGCATT GCATTGTTTT CCTGCTCGAT
TTCGGCCTGG AACCCGCCGT GATCCAGGAA CGCGTGCTGC TGCTCAAACC CGTCTCCATG
CGTTTGGAGC TCAAAGAGGG CATTAACCAC TCCTATATCA TCGACGACGC CTATAACAAC
GACTTGCAGG GCCTCGCGAT GGCGCTCAAC TTCCTCGCCC AGCAAGAGCA GCGCAACCGC
AAAACGGTGA TCCTCTCGGA TGTGCTCCAA ACCGGACAAA CGCCCACGGA GCTGTATAAA
ATGGTTTCCC GCCTGCTGAG TGAAAAAAGC ATTGACCGCC TCATCGGTAT CGGAAAACAA
ATCAGCAGCC AGGCATCGCT GTTCGATATT GCCGAGCAGG AATTTTACGA CGATACCGAC
AGTTTTCTCA AAACATTCGC CTTTCCCACG CTTGCGGATA CGCTCGTGCT CGTGAAGGGT
GCCCGGCCGT TTTCGTTTGA AAAAATCGTG CACCGCATTC AGCAGAAAGC GCACGACACG
GTGCTGGAAA TCAACCTGGA TGCATTGGTC CACAACCTGA ATTATTATCG CGCGCGGGCT
GGTCAGGGTA CAAAGATCAT GGCGATGGTG AAGGCATTCG CCTATGGCAG CGGCAGCTCC
GAGGTGGCCG CATTGCTGCA ATACCACCGC GTGGATTACC TGGGCGTGGC TTACACGGAC
GAGGGTGTAA TGCTCCGCCA AAGCGGCATT ACGCTGCCCA TTATGGTCAT GAATGCAACC
CTGCCGACCT TCGACCTGCT GTGGCAGTAC AAACTTGAAC CTGAAATATA TAGCCGCCGC
ATCCTCACCG ACTGGATCGA GTACATTACC AGGAAAGGCG AGCCGACCAA CACGCCTTCC
GTGCATTTGA AACTCGATAC GGGAATGCAC CGCCTCGGTT TTGTGAAGGA CGACTACGAA
TGGCTGGTAG AACAGCTCCG CCAGAATCCC GCGCTCAAAG TAGCGACCCT ATTTTCGCAT
TTGGTGGGAG CCGATGAAGG CGTGCATAAC GAGTTTTCAA GGAAACAATA CGCGCAATTC
ATGGAGGGCG CCGAGCTGAT CGAAGCGACT TTGGGATACA AAACCATTAA ACACATCCTC
AACTCCGCCG GCATCGTCCG CTTCCCCGAG TACCGCCTCG ATATGGTGCG GCTTGGCATT
GGCTTGTATG GCGTGGAAGC AACCGGCCAG GATCAGCGTG CATTGCAGTC GGTAGGTACA
TTGAAAACCA TTGTTTCGCA AGTGAAATAC CTCTCGTCGG GCGAGACGGT AGGTTACAGC
CGCAAGGGCG TGGTAGACCA CGACTCGGCG ATTGCGACGC TGGCAATCGG TTATGCGGAT
GGTTACGACC GTGGCCTGGG CAATGGCGTG GGTAAGGTGT GGGTGAATGG CACATTGTGC
CCCACGATCG GCAACATTTG CATGGATATG ACGATGATCG ACGTCACCAA TGCGCAGGTA
GAAGAAGGGG ATGAAGTGAT CGTTTTCGGG AAGGAAGTTC CGATTACAGA ACTAGCGAAA
ACCATCAACA CCATCCCCTA CGAGATCCTG ACAGGCATTG GTGACCGTGT CAAGCGTGTA
TTTTTTAAAG AGTAA
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| Protein sequence | MSLTVNTSPI VTTQAQYILT DSRQVSFPGQ SIFFAIKGER HDGHRFLPEL YAAGVREFVV
EEAAFTGALR ETAATWDDAQ IWVVSSSIRA LQQLVASKRK QFDIPVVGIA GSNGKTIVKE
WLVQLLSPGR SIVASPKSYN SQIGVPLSVW NLSKEHSLAI FEAGISKAHE MEYLQPVMQP
TIGIFTNIGP AHDDGFRSRK QKITEKLRLF TKVKKLIYRK DYHEIDEEIS LILKPVNAFL
ETLSWGSNYS GSHVQVTFNP QKDKTVISLT GKLGNHTFET GFRDDASLEN LTHCIVFLLD
FGLEPAVIQE RVLLLKPVSM RLELKEGINH SYIIDDAYNN DLQGLAMALN FLAQQEQRNR
KTVILSDVLQ TGQTPTELYK MVSRLLSEKS IDRLIGIGKQ ISSQASLFDI AEQEFYDDTD
SFLKTFAFPT LADTLVLVKG ARPFSFEKIV HRIQQKAHDT VLEINLDALV HNLNYYRARA
GQGTKIMAMV KAFAYGSGSS EVAALLQYHR VDYLGVAYTD EGVMLRQSGI TLPIMVMNAT
LPTFDLLWQY KLEPEIYSRR ILTDWIEYIT RKGEPTNTPS VHLKLDTGMH RLGFVKDDYE
WLVEQLRQNP ALKVATLFSH LVGADEGVHN EFSRKQYAQF MEGAELIEAT LGYKTIKHIL
NSAGIVRFPE YRLDMVRLGI GLYGVEATGQ DQRALQSVGT LKTIVSQVKY LSSGETVGYS
RKGVVDHDSA IATLAIGYAD GYDRGLGNGV GKVWVNGTLC PTIGNICMDM TMIDVTNAQV
EEGDEVIVFG KEVPITELAK TINTIPYEIL TGIGDRVKRV FFKE
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