| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4949 |
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| Symbol | |
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| ID | 8228555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 5985177 |
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| End bp | 5988365 |
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| Gene Length | 3189 bp |
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| Protein Length | 1062 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644932797 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003089314 |
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| Protein GI | 255038693 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.188744 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.822466 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAAC ACTACCTTCA CCTGGGAAGC AGGCTGATTT GCTGCGTGCT GCTTTTCCTC
ATCTCTCTGA CGGCTTTTTC GCAGGATATG ACCATTACCG GAAAGGTGAT GGATGAACAA
TCCGGTTCAA GCTTGCCAGG AGCTTCCGTC ACACTAAAAG GCTCGACTTC GATTGGCGTC
ACCACCGATG CAGATGGCCG GTATTCCATT AAAGTGCCTG CCACTGCGCA GATTCTCGTG
TTTTCGTTTA TTGGTTACAC CGCCAAAGAT GTGGCGATTG GCAATCGGAC CGTGATCGAC
GTTTCGATGG CCAGCGACGT TAGCGCGCTG GAAGAAGTGA TTGTGACCGG TTACGGCTCA
CAATCGCGGC GTGACATTAC GGGTTCGGTT ACGACTGTTA ATGCCAAGGA CCTTCAATCG
GTGCCGGCCA CTACTTTTGC CCAGCAGTTG CAGGGCCGGG CTTCGGGTTT GAACATCGTG
AACGACGCAA CGCCCGGCGG TAATGCAACG GTGCGTATAC GGGGATTCGG TACGATCGGT
AACAACGACC CGCTGTTCAT CATCGATGGC GTGCCGACTG AAAACCAGGG TAACCTTAAT
CCCAACGACA TCGAGACGAT CCAGATCCTG AAAGATGCGT CGTCGGCGTC CATTTACGGT
TCGCGCGCGG CGAATGGGGT CGTTATCATT ACGACCAAAC GCGGTAAAAT CGGCAAGCCG
GTGATCTCTT TCAACGCTTA TTATGGAACA CAAAAGGCGT ACAAAGAAGT AGAAGCCCTG
AATGCCGAGG AACTGGGCCG CTATTTGTAC CTGGCCGACA AATATGCAGG CAAAACACCG
TCGCATGGGC AATACACATT TGGCCCGAAC GGCGAGGTTA CAGTGCCCGA TTACGTGTTT
CCCAGCAAGG GTAAGGAAGG TACGCCGGAT GTAGATCCCG CCAAATACTC GCTTGTGCCA
GGTAACATTT ACGCCATCAC CAAAGCCGCC GATACCAACT GGTGGCGGGA GCTGACCACC
TCGGCGCCTA TTCAGAATTA CCAGCTTTCG GCCACCGGTG GTACGGAAAA CAGCCGATAT
GCATTGTCGG TCGGCTATTT CAGTCAGGAT GGCGTGGTTA AATTCATCGG TTACGACCGT
TACACTGTCC GCGCCAACAC CGAGTTTTCG ACTGCCAACA AGCGATTCCG GGTAGGAGAG
AACCTGGCGG TGTCGTTCGA TAACAGGAAG GGGGGGTTTG GAAATAACCA GGAACAAAAT
GCGGTTTCAG GTAGCTACAA GCACCATCCG CTGCTTCCGA TTTATGACAT TAAAGGTAAC
TTCGCCGGTT CGCGCGGAGC CAACCTGGGT AACAACTCCA ATCCTTATGC GACGTTGTTC
CGCGAGCAGG ATAACCGCAC TTACCGCCTG CGTGCATTCG GTAATGTGTA CGGAGAGTTC
GATATTATTC CCAATCTGAC GGTTAAAACC AGTTTGGGTA TTGACGGTGT GAGCCAGCGG
GGCCGGTACA TTGGCCGCGC TAACCCCGAA TATGTAGAGG GGAGCTTCAA CAATGGGTCC
ACTTCGACGG ATTATTATTC TTATCAATGG GTTTGGACCA ACACGCTGAG CTATTCGCAC
AATTTTGGGA CGAACCACAA AGTGGATGCT TATGTAGGCG TGGAGGCTAT CCGTGAGTTT
GCGGAGGAAT TCGGGGCCAG CCGCCAGGGA TATGCCTTTG AAATACCTTC CATTATTAAT
TATCTCAACC TCGGCGATGC TACGAAAGCG ACCAATTTTG GTGGTGTGAA CCGCGATTAC
AGCCTCTATT CGCAATTCGG GAAAGTGAAC TATGCTTACG CGGACAAATA TCTTTTCCAA
TTTATCCTGC GGAACGACGC GTCCTCCCGT TTTCAGCAAG CATCCAGAAG TGCGGTATTT
CCGGCATTTA GCCTCGGTTG GCGTTTGTCC GATGAAAACT TCATGAAGTC GGTGGGCTTC
ATTACGGACA TGAAACTGCG CTACGGCTGG GGTAAAACAG GCAACCAGAA AATCGGGGAC
TACAATGCCT ATACCACATA CCGGGCCAAT ATCTTCAACG CCGGTTATCC GATCGACGGA
TCGGCCAGTC AACCGACGAT CGGCTACGAC GCCGCATCAT TCGGTAACCC GAATGCGAAA
TGGGAAACCA CCACTTCTAA CAACCTCGGC CTGGACGCGA CCTTCCTGAA CGACGCATTG
ACCCTCGAAC TGGACTTCTG GAACCGGAAA ACGACCGATA TGCTCTTTTC GACGCCGATC
ACCTACACCG CCGGAGATGC CAATGCGCCT TCGTTCAACG TAGGGCAGAT GACCAACAAG
GGGATCGACC TCGGATTGTC GTACCGCAAC ACGGCTTTGA AAGGTGAGCT GCGTTATGGC
GCTTCGTTCA ATTACTCGAT GTACCGCAAT ACCGTGGACA AGCTCGATGA AAGCGATAAT
ACCAAATATT TTGGAGCCGG CTCGCGCGTG CCGGCCGTGA CGCTCACACA GGCAGGACTG
CCGATTTCGT CGTACTACGG TTATAAAGTG CTCGGTATTT TCCAGTCCGA CGAGGAGGCC
AAAGCCTGGG CGCCTTATGG CTCGTACAAC AAAGCGGGCA AATTCAAAAT CGCCGACATT
AACGGAGATA ACAAAATTAC CGACGACGAC CGTACGGTAA TCGGTAATCC ACACCCCGAT
TTTGTATATG GTGTGAATGT GAATTTGGGA TACAAAGCTT TTGACCTGAC CGTGTTCGGT
AATGGTGTGG TAGGTAACGA AATATTCAGC TATCTGCGTT ATTTCACGGA TTTCAACACT
TTCCAGGGTA ACCGTGCGAA ACGTGCCTTG TATGACGCCT GGCAGCCGGA CCATAAGGAA
GGTACCGTGC CCATTATGGA TGCCGACGAT CAGATCAGCA GCCGCCCTTC CAGCTATTTT
GTTGAAAAAG GCACCTACTT CCGTCTGAAA AACGTGCAGC TAACTTACTC TTTGCCCAAA
AACATCGCCG CCAAGATCGG TTTCAGCAAT GCACAGATAT ACGTGCAGGG ACAGAACATG
TTCACCGTCA GCAACTATTC AGGTTTGAAC CCCGAAATCC AGACGGGTGA AGACCGGACA
CTCGGTTTCG ACGGCGGCTA CATGCCCGTG TCGAGGACAT TCCTGGTCGG CCTGAATGTA
TCATTCTGA
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| Protein sequence | MKQHYLHLGS RLICCVLLFL ISLTAFSQDM TITGKVMDEQ SGSSLPGASV TLKGSTSIGV
TTDADGRYSI KVPATAQILV FSFIGYTAKD VAIGNRTVID VSMASDVSAL EEVIVTGYGS
QSRRDITGSV TTVNAKDLQS VPATTFAQQL QGRASGLNIV NDATPGGNAT VRIRGFGTIG
NNDPLFIIDG VPTENQGNLN PNDIETIQIL KDASSASIYG SRAANGVVII TTKRGKIGKP
VISFNAYYGT QKAYKEVEAL NAEELGRYLY LADKYAGKTP SHGQYTFGPN GEVTVPDYVF
PSKGKEGTPD VDPAKYSLVP GNIYAITKAA DTNWWRELTT SAPIQNYQLS ATGGTENSRY
ALSVGYFSQD GVVKFIGYDR YTVRANTEFS TANKRFRVGE NLAVSFDNRK GGFGNNQEQN
AVSGSYKHHP LLPIYDIKGN FAGSRGANLG NNSNPYATLF REQDNRTYRL RAFGNVYGEF
DIIPNLTVKT SLGIDGVSQR GRYIGRANPE YVEGSFNNGS TSTDYYSYQW VWTNTLSYSH
NFGTNHKVDA YVGVEAIREF AEEFGASRQG YAFEIPSIIN YLNLGDATKA TNFGGVNRDY
SLYSQFGKVN YAYADKYLFQ FILRNDASSR FQQASRSAVF PAFSLGWRLS DENFMKSVGF
ITDMKLRYGW GKTGNQKIGD YNAYTTYRAN IFNAGYPIDG SASQPTIGYD AASFGNPNAK
WETTTSNNLG LDATFLNDAL TLELDFWNRK TTDMLFSTPI TYTAGDANAP SFNVGQMTNK
GIDLGLSYRN TALKGELRYG ASFNYSMYRN TVDKLDESDN TKYFGAGSRV PAVTLTQAGL
PISSYYGYKV LGIFQSDEEA KAWAPYGSYN KAGKFKIADI NGDNKITDDD RTVIGNPHPD
FVYGVNVNLG YKAFDLTVFG NGVVGNEIFS YLRYFTDFNT FQGNRAKRAL YDAWQPDHKE
GTVPIMDADD QISSRPSSYF VEKGTYFRLK NVQLTYSLPK NIAAKIGFSN AQIYVQGQNM
FTVSNYSGLN PEIQTGEDRT LGFDGGYMPV SRTFLVGLNV SF
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