| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4695 |
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| Symbol | |
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| ID | 8228301 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 5661026 |
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| End bp | 5664472 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644932544 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003089061 |
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| Protein GI | 255038440 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000484676 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATGTA TCCTGGCTGG CCTGTTCGCG GGCATCACGT GGGCGAACGA CGGGAGGGCT
CAATCCGCAT TGAGCCAGAA GGTTACCGTT GACATCCGGA ACGAGGAGAT CAAGACGATC
TTCGCGCAGC TGGAAAAGCA GACGAATGCC AGGTTTATAT TCAGCTCAAA ATTGATCCAA
TCCGACCGCC GGGCTTCCAT TCGGGTTAAA AACGGCTCAT TATCGGCCGT GCTGGATGCT
TTGCTCAAAC CGCTCGAATT GCATTACCGC ATCAAGGACG ACCTGATCGT GATCAAGCCC
GACCATCCCG GACAGGCTGC CGAACCGGTT TCCGACGAAG TGCCTGTGGT GGAGATCAGC
GCGGCCGCGA TGGTGGATAA GGCCATAGCA GGTATGGTGA AGGACGAAGC CGGTGCTGGG
TTGCCGGGTG TGAGTGTGGT GCTGAAAGGG ACTCAAACCG GTACATTGAC CGACGAAAAG
GGCAACTACT CGATCACCGT CCCGAATGGT GACCACGTTC TGATTTTCTC GTTCGTGGGG
TTCATGTCGC AGGAAATTGC CGTGCCTTCC AGCCAGAGTG CATTGGATAT TACGCTGAAA
GTGGATAATA AGGCACTGGA AGAGGTGGTT GTGGTAGGTT ATGGTACGCA AAAGAAAGAA
TCGCTGACGG GCTCCATCGC CACGGTCACG AGCAAGGATA TCGAGCGCGT GCATGGCGGC
GCGACGGTGA GCTCGGGCCT GGCCGGAAAA ATTCCCGGTG TAACATTCCG GATGCCCGAC
GGCCGCCCCG GCGCGAGTGC CAACATCCAG ATCCGCAACA TGGGTAATCC CCTGTTTGTG
ATCGACGGAA TCCAGCAGGA CGCCGGCCAG TTCAACAACA TTTCTCCCAA CGATATCGAA
AGCATTTCAG TACTAAAAGA CGCTTCTGCG GCCATTTACG GAGTTCGTGC GGCTAATGGC
GTGGTGGTAG TGACCACAAA ACGCGGCAAA ATGGGCGGGA AAAATACCGT GAGTCTCGAT
GCCTACACCG GCTGGCAAAA CTGGTCGCGG TTCCCGAATG TGGTGAACGA TTCGTACCAA
TGGATGCTCG GGAAAGCCGA GGCGGAAATG AACCAGTTTG GCAGGACATC GATCACACAA
GCGGAGCTTG ACAAGTACCG CGCCGGTACC GAGCGTGGTT ACCAGACATT CAACTGGAAA
GATTTTATCA TCAAGAAAAA TGCCCCGCTG AGCTCCGTAA ACCTGAATAT GACAGGTGGT
TCGGATAAAA TCAACTATTA CATTTCCGCT ACACGCCTGA GCCAGAACTC CGTGCTAGGC
CGGGAATTTA CATTCGACCG GACTAACATC CAGAGCAATG TTGACGCCAA GATCACCGAT
CGCCTGAAAC TGGGCGTGCA GATCAACGGC CGTATCGAGA AGCGCGACCA GCCCGGTATC
CCCGGCTCGG ACGACTACTG GCTGCCCCGC TTCGCGATCC TGCGTAACCG CCCGTTCGAG
CGCCCGTACG CCAACGATAA CCCTGAGTAT CTGAACGATA TCAAGCACAA CGAAACCAAC
TGGGCTTATA ATAACAAGAA ACTGGGCGGT TACTGGACCG AGTACTGGCG TGTTTTGCAA
ACCAATTTCT CGGCAGAATA CCAGATTCCG GGCGTGAAAG GATTGAGCGC CAGAGGGATG
TATTCCTACT ACATCGCCGA CCGTGTGATG AATGGCCACG AGTACACCTA CAAGGCCTAC
ACCTACAATC CGAACGACGA TACTTACACC GTAACCGGCG GCTCCACCAA CCCGTGGCGC
GAGCGCGGTA CCAAAAAAGT AATGCGCAAT GTGTATCAGG GACAGTTGGC TTACAACAAT
ACGTTCGGCA AACACACCGT CGGCGCGACA TTCGTTTCCG AGTGGCAGGA TGAGCACGTA
CAAGAGCAGT GGGTGCATGC CGTTCCCAAA ACCAACGTGC TGCCATTGAT CTACTTCCCA
ACCATGGACA CGTATAATGA TACCGATACC GAGCTTGCGC GTATAGGGTA TATCGGTAGA
GTGAATTACG ACTATGGGGG CAAGTATTAC CTCGAACTTT CGGCCCGCCG CGATGCCTCC
TGGAAGTTTG CTCCGGATCG TCGGGTAGGC TGGTTCCCGT CGGCGTCGGC AGGATGGAGG
ATTTCGGAGG AAGATTTCTT TAAAAGAGTG GTGGGCGAGC GCAGTATTTT GGATGACCTG
AAATTCAGAG GGTCGTATGG TATCCTGGGA GACGATAACA TTCTGTTCGA TAACGATCCT
AACCGTCCGC TCAGCCCTTA CGCCTATTTG CCAGGATACG ATTACAACAA AGGCAATGTG
ATCCTGAGCG GCAATCCGGT CGTGACATCG CGTGATAAAG GCCAGATTAT CAACACCATT
TCCTGGTTCA AAAGTAAAAT CCTCGACATT GGTGCCGACT TCTCTTTCCT TGGCACTAAA
ATCACCGGTA GTGTAGATTA TTTCTATCGC CTCCGCACTG GCTTGCTCGG CCGGAAATAC
GACATCCTCG TGCCCAGCGA ACTGGGTTAC TCGCTGCCCG ACGAAAACGT AAACAGCGAC
TCGCAACGCG GTTGGGAAGG TGCATTGACC TACAATGGCA AAGCCGGTAA CATTAACTAT
TCCGTAGGTG GTAATGTATC GTTCACACGC ACAAGGTTTA ATGAATCGTA CAAACCGATT
TTCAATAACT CCTGGGACCG TTACCGCAAC TCGAAAGAAG ACCGCTACAC CAACATTTTC
TGGGGTTACG AGGCCATCGG CCAGTTCCAG TCGGCGCAAC AGATCGCGGA ATATCCGGTT
AATATCGACG GCCAGGGCAA CCGCACATTG CTGCCCGGTG ATTTGATTTA CAAAGACATC
AATGGTGACA ACGTCATCAA CGGCCTCGAC GAGCGGCCGA TCGGCTACAA TGCAACCGGC
CAGCCGAATG TGAACTTCGG GTTGAACTTC TCCGTAAGCT GGAAAGGCAT CGGTTTCAAT
GCAGATTTCT CGGGCGGCGC CATGTATTCC TGGAACCAGA ACTACGAGCA GCGATGGCCA
TACCAGAACG AAGGTGCTTT GAACAGCATT TTCCTCGACA GATGGCGCCG CGCCGATCCG
TTTGACGTGA ACAGCGAGTG GATTCCGGGT AAGTATCCCG CATTGCGCTA CAACGACGGC
GGCCATATCA ATTACAAAAA CTCGACTTTC TGGGTGCACA ACGTGAAATA CATCCGCGCA
CGGACCATCG AGCTGAGCTA CTCGCTGCCC AAATCCATTT TGGAGAAAAT CCGCTTGCAG
CGCGCGCGGT TCTACATCAA CGGCTATAAC CTGTTCTCGA TCGACAACGT GAAAGACTAC
GGCATCGACC CTGAAATCGA GAACGACAAC GGGCTGCAAT TCCCGCAGAA CAAGTTTGTG
AACATAGGCA TCAACCTATC TATTTAA
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| Protein sequence | MQCILAGLFA GITWANDGRA QSALSQKVTV DIRNEEIKTI FAQLEKQTNA RFIFSSKLIQ
SDRRASIRVK NGSLSAVLDA LLKPLELHYR IKDDLIVIKP DHPGQAAEPV SDEVPVVEIS
AAAMVDKAIA GMVKDEAGAG LPGVSVVLKG TQTGTLTDEK GNYSITVPNG DHVLIFSFVG
FMSQEIAVPS SQSALDITLK VDNKALEEVV VVGYGTQKKE SLTGSIATVT SKDIERVHGG
ATVSSGLAGK IPGVTFRMPD GRPGASANIQ IRNMGNPLFV IDGIQQDAGQ FNNISPNDIE
SISVLKDASA AIYGVRAANG VVVVTTKRGK MGGKNTVSLD AYTGWQNWSR FPNVVNDSYQ
WMLGKAEAEM NQFGRTSITQ AELDKYRAGT ERGYQTFNWK DFIIKKNAPL SSVNLNMTGG
SDKINYYISA TRLSQNSVLG REFTFDRTNI QSNVDAKITD RLKLGVQING RIEKRDQPGI
PGSDDYWLPR FAILRNRPFE RPYANDNPEY LNDIKHNETN WAYNNKKLGG YWTEYWRVLQ
TNFSAEYQIP GVKGLSARGM YSYYIADRVM NGHEYTYKAY TYNPNDDTYT VTGGSTNPWR
ERGTKKVMRN VYQGQLAYNN TFGKHTVGAT FVSEWQDEHV QEQWVHAVPK TNVLPLIYFP
TMDTYNDTDT ELARIGYIGR VNYDYGGKYY LELSARRDAS WKFAPDRRVG WFPSASAGWR
ISEEDFFKRV VGERSILDDL KFRGSYGILG DDNILFDNDP NRPLSPYAYL PGYDYNKGNV
ILSGNPVVTS RDKGQIINTI SWFKSKILDI GADFSFLGTK ITGSVDYFYR LRTGLLGRKY
DILVPSELGY SLPDENVNSD SQRGWEGALT YNGKAGNINY SVGGNVSFTR TRFNESYKPI
FNNSWDRYRN SKEDRYTNIF WGYEAIGQFQ SAQQIAEYPV NIDGQGNRTL LPGDLIYKDI
NGDNVINGLD ERPIGYNATG QPNVNFGLNF SVSWKGIGFN ADFSGGAMYS WNQNYEQRWP
YQNEGALNSI FLDRWRRADP FDVNSEWIPG KYPALRYNDG GHINYKNSTF WVHNVKYIRA
RTIELSYSLP KSILEKIRLQ RARFYINGYN LFSIDNVKDY GIDPEIENDN GLQFPQNKFV
NIGINLSI
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