| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4225 |
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| Symbol | |
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| ID | 8227828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 5112339 |
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| End bp | 5115464 |
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| Gene Length | 3126 bp |
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| Protein Length | 1041 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644932073 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003088593 |
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| Protein GI | 255037972 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.501222 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAA AGCAGGAAGT AAAGTGTCCG CTTTGGATGA AACTTACTTT TTACCAATTT
CTCGCCTTAT CGGCGTCGGC TGGCGCCACC TACGCCATGC CAATGGCCGC CGGAGGCACA
GCGAAGCATT CCATTACATC GCAGGCCGCA AGAGCGGTAA CAGGCCGGGT AACCGACAAC
AAAGGCGAGG CCGTACCCGG TACTACGGTA GTGATCAGAG GCAGCGAAAC CGGTACGATC
ACCGACGCAG ACGGCAAGTT TTCCATCGAC GTGCCCAACG ACCAGGCAGT GCTGATATTC
TCCTCGATCG GCTTCAACAA AAAAGAAGTA ACCGTGGGAG CGCAAAGTGT GCTGGATGTG
GTGTTGGAAA CATCCGCAGC TACGCTCAAC GAGGTGGTGG TGACCGCACT CGGTATCCAG
CGCGACAAGA AAGCGCTTAC CTATGCAACG CAGCAAATCG GCGGGCAGGA ACTGAGAGCC
GCAGCCAACA CCAACTTTGT GGATGCACTC AATGGTAAGG CAGCCGGTAT CGACATTAAA
GTGAGCAGCT CCGGTGCGGG TGGTTCCACG AGAGCGGTTC TCCGCGGTAA TAAATCCTTG
CAGGGGTCGA GCGAGGCATT GTATGTGATC GACGGTATCC CGATGGTGAA CAACAAAGGT
GCCCAACCGG GTTCTTACGG CGGTACCGAT GGTGGTGACG GCCTCTCGGC CATTAACCCG
GCCGACATCG AAAGTATCAG CATCCTGAGA GGTGCCAACG CGTCGATTCT TTACGGTAGC
CAGGGCGCCA ACGGGGTGAT CCTGATTACT ACCAAAAAGG GCTCGGAAGG AAAACTGTCC
GTTGATTTCA ACTCCAGTGC GGTGCTCGAA AAAGTATCCG GCCTGCCGGA TTTTCAATAC
CGCTACGGAA GCGTGGGCGG AGATTACAGC TGGACGCCCG TCGGAACTCC GGAAGTAAAA
TCGGATAATT ATCAGAAAAA ATACATCGAG GACTTCTTCC AGACCGGCGC TACTTTCACC
AACTCGGTGG CGATCACCGG TGGAAATGCG AAGACGAACG TTTACTTCTC TTACGCCAAC
ATTTCCTCCA AAGGTGTAAT GCCGACCAAT ACCTACCGGA AAAACAACTT TTCTTTCAGA
CAGAGCACGA AATTGCTGAA AGACAAGATG ACGATCAGCT CCGGCATTAT CCTCTCCGCC
GAAACATCCA AAAATCGCCC GGGTGCAGGT TATTACAACA ACCCGCTCAC CGGCTTGTAC
CTCTTCGCCA GAGACCGCGA TTTCAACAGC TACAAAGACA ATTACGCGGT GTTCAACACG
GAGCGGAACA TGGATAAGAT GAACTGGTAT TCAACGGAGG AAAAGCAGAA TAACCCTTAT
TGGGAACTGA ACAGAAACCC GAAGTTGCAG ACCTACAAAC GACTCATCGC CAATGTAAAA
CTCTCCTACG ACATTGTGGA GAACCTGCGG TTTGACGTAA GGGCCAACCT TGACTACAAC
AACGTGCTGG ACGACAAGCG CTATGCGGCG GCTGGTAACT CGGTGAGTGT GAGCCCGAAT
GGTACATGGG CTTATGCGAG ATACAACGAT CAGTCGATCT ACGCCGATGG TATCCTTACC
TACAACAAGA GCCTGGGCGA TTTCAGCCTG AATGCATTGG CTGGTTTGAG CTACCAGAAG
AATAAGTATT TCGATGGAAT GGCTGTGAAC AACGGTACGG TGTCGTTGCA ATATCCGAAC
GTGTTTACAT TCTCGAACAT GCCTTACAAT GTGATTTTCC AGAACCACCC GGATTACAGC
AATACCATCA AGCAAGGCGC ATTCGCCAAC TTGTCGCTCG GCTTCAAGGA GTTCCTCTTC
CTGGACCTGG CGGGACGTAA CGACTGGGCT TCTACCCTCG CGCTTACCGG CAACCAATCG
TATTTCTACC CGTCTATCGG CGGATCGGCG GTGATCAGCC AGATGCTCAA CCTGCCGCAG
GCGATCTCGC TGCTGAAAGT ACGTGCATCA TTCTCGCAAA CGGCCAACGA GGTTCCTTAC
AACAGGGTCC TTCCATTGAG CTCGATCGGT GGTGCGGGCG GCCCGAGCGG CATAGGCGGT
ATCAACAGGC CAACGCAGGT GCCATTTACC AACCTGAAAC CTGAAAAAAT CGTGGCCAAC
GAATACGGTG TGGAAGCGAA GTTCTTCCGC AACAAACTCG GTCTTGATTT CACATACTAC
AATGGCGTGA GTACCAACCA ATTCCTGGCA TTGAACGCAC CTTCGGGCTC GGGATACACT
ACTTATTATG TGAATGCGGG ACGGATCGAA AACAATGGAT TTGAACTTAC ATTGAATGCC
GAAGCCGTAC GCACCGACCG TTTCAGCTGG AACACGACCC TCAACGCGTC TCAAAACAAA
AACAAGATCA TCGAACTCAT CGCATCGAAC CCTAACTACC AGGTAGGCGG CGACAATGAG
GGCTTCGCGT CGATTATCAA AGCGGGCGGT TCTTTCAATG ACGTTTATAT CTACAAGTTC
GCGCGGAATG ATGCCGGACA GATCATCCTG GATGGCAATG GCGTACCTAC CAAGGCTGCA
ACGCAAACCA AAGTAGGCAA TGTGAACCCG AAACTGTTGC TTGGCTGGAC CAACAACCTG
AACTACGGTA ACTTCTTCGC CAATGTGCTG GTAAACGGTA AGTTCGGCGG CGTGGCATTC
TCCAAAACAG AAGCATTCCT GGATTCCTAT GGTGTGAGTG AAAGATCGGC GGAAGCCAGA
GACGCGGGTA CCGTGCCTAT TAATGCCGTT ACGCCGGAGG GCGCAGCCAT TACTTCCATT
GCTCCGTACA CCTATTATTC GGCCATCGGC GACCGGAACA AGATCATGGA GCCGTATGTG
TATTCGAGAA CCAACGTGCG TTTAGGTCAG CTTGTGATCG GCTACAACTT CAAAAGCAAA
GCCGCTAACC CCATATTCAA AGATGCTTCC CTCTCTTTCG TAGGCAGGAA CTTGTTCTTT
ATCTACAAAA AAGCACCTTT CGATCCTGAG CAGGCTATGA CTACCAACAA CGACCTGCAG
TCGGCCGACG TGTTTGGTTT GCCATCCACA AGATCCTACG GACTGAACCT TAAGGTTACT
TTCTAA
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| Protein sequence | MKRKQEVKCP LWMKLTFYQF LALSASAGAT YAMPMAAGGT AKHSITSQAA RAVTGRVTDN
KGEAVPGTTV VIRGSETGTI TDADGKFSID VPNDQAVLIF SSIGFNKKEV TVGAQSVLDV
VLETSAATLN EVVVTALGIQ RDKKALTYAT QQIGGQELRA AANTNFVDAL NGKAAGIDIK
VSSSGAGGST RAVLRGNKSL QGSSEALYVI DGIPMVNNKG AQPGSYGGTD GGDGLSAINP
ADIESISILR GANASILYGS QGANGVILIT TKKGSEGKLS VDFNSSAVLE KVSGLPDFQY
RYGSVGGDYS WTPVGTPEVK SDNYQKKYIE DFFQTGATFT NSVAITGGNA KTNVYFSYAN
ISSKGVMPTN TYRKNNFSFR QSTKLLKDKM TISSGIILSA ETSKNRPGAG YYNNPLTGLY
LFARDRDFNS YKDNYAVFNT ERNMDKMNWY STEEKQNNPY WELNRNPKLQ TYKRLIANVK
LSYDIVENLR FDVRANLDYN NVLDDKRYAA AGNSVSVSPN GTWAYARYND QSIYADGILT
YNKSLGDFSL NALAGLSYQK NKYFDGMAVN NGTVSLQYPN VFTFSNMPYN VIFQNHPDYS
NTIKQGAFAN LSLGFKEFLF LDLAGRNDWA STLALTGNQS YFYPSIGGSA VISQMLNLPQ
AISLLKVRAS FSQTANEVPY NRVLPLSSIG GAGGPSGIGG INRPTQVPFT NLKPEKIVAN
EYGVEAKFFR NKLGLDFTYY NGVSTNQFLA LNAPSGSGYT TYYVNAGRIE NNGFELTLNA
EAVRTDRFSW NTTLNASQNK NKIIELIASN PNYQVGGDNE GFASIIKAGG SFNDVYIYKF
ARNDAGQIIL DGNGVPTKAA TQTKVGNVNP KLLLGWTNNL NYGNFFANVL VNGKFGGVAF
SKTEAFLDSY GVSERSAEAR DAGTVPINAV TPEGAAITSI APYTYYSAIG DRNKIMEPYV
YSRTNVRLGQ LVIGYNFKSK AANPIFKDAS LSFVGRNLFF IYKKAPFDPE QAMTTNNDLQ
SADVFGLPST RSYGLNLKVT F
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