Gene Dfer_3645 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3645 
Symbol 
ID8227230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4442739 
End bp4443737 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content57% 
IMG OID644931477 
Productcell wall hydrolase/autolysin 
Protein accessionYP_003088015 
Protein GI255037394 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0804567 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGCA TTTTCCTCAC CTTATTGTTG CTCGCCGGCA TCGCCTCGAT CGCCGTCGCT 
CAGTCGAAAC GAAAGCCGCT CAAAAGAAAA GTAATATGCA TTGATCCGGG CCATGGCGGC
ACCGCCGCTA CCGACAGCTA TCGCGTGGGC CCGGGCGGAG AGCGGGAAGA ATGGGTTAAC
CTCCGTGTGG CGTTGCTATT GCAGCAAATG CTCGAAAAGA AGGGCGCCAG GGTGCTCATG
ACGAGGACTA CCGACGTGGA AGTGCCGCTG GCCGATCGTG CAAAGCTCGC CTGCGACCGC
GAAGCCGATC TCTTCGTATC AATTCACCAT AATGCGACGG CCGATTCGTC GGTGAACTTC
CCGATCATTT ATTTTCATGG AAATATGTCG GAGAACGTCG CAAGCGTCAA TTTTGGCAAA
GAACTCTCGG CTACGTTGCT GAAACATTTG TACAAACCCG GTACACCGGT TTCGCTGGTG
TCGGACTTCA CTATTTTTCC TGATGCGGGC GCATCGGTGC TGAGGAATAC ATATGGCATG
CCCGCGCTGC TCGCTGAGGC GTCTTTTTTT ACCAACCCCG CCGAGGAGCG CCGTCTGAAA
CAGCCTGAAT ACAACACCGC CGAAGCCCTC GCCTACACCG AGGCCATTGT GGCATTTTTC
GCAAAACCGG TTGCGCCGAT TGCCGCAAAG AACTCGAAAG TGCCCGCGAT CCCTGCATTC
AAGGTCTTTC AGGAAGCGGA GCGCATGACG CCCATTGCCC GGCGCTGGCG GCAGGATTTC
GACGAAGGAA AGGTGTTTAT GACAAAAAAG GAGACGGCAC TGCTCCGCGA ATCGTACGAA
CTGTTCACGC GCTCGGCCCG CTCTTTCCCC GACTCCTGGC TCGCCGGCCA AAGTCATCAG
AACCGCGCCG TACTGCTGCG GAAACTGGGC AAGGCCACCG AAGCCGGACA GGAGGATCAG
CGGTTCAGGG AATATTATGT GCCGATGAAC GGCAAGTAG
 
Protein sequence
MNRIFLTLLL LAGIASIAVA QSKRKPLKRK VICIDPGHGG TAATDSYRVG PGGEREEWVN 
LRVALLLQQM LEKKGARVLM TRTTDVEVPL ADRAKLACDR EADLFVSIHH NATADSSVNF
PIIYFHGNMS ENVASVNFGK ELSATLLKHL YKPGTPVSLV SDFTIFPDAG ASVLRNTYGM
PALLAEASFF TNPAEERRLK QPEYNTAEAL AYTEAIVAFF AKPVAPIAAK NSKVPAIPAF
KVFQEAERMT PIARRWRQDF DEGKVFMTKK ETALLRESYE LFTRSARSFP DSWLAGQSHQ
NRAVLLRKLG KATEAGQEDQ RFREYYVPMN GK