| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3478 |
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| Symbol | rpsA |
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| ID | 8227063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 4257551 |
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| End bp | 4259347 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644931315 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_003087853 |
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| Protein GI | 255037232 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.199022 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.500407 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAAGG AAAAACAAAA TCAACCGCTT CCCGAATTCG ATTGGGACAA AGCATCAGAC
AAAGGTTTCG GAACCGCTTA TTCATCTGCC GACCGTACCC GTCTGGAACA AATGTATGAA
ACTACCCTTT CTCCGGTTTC GGAAAAAGAA GTGGTTAAAG GTGTTGTAGT AGGTATTACA
GACCGCGAGG TGATCCTGAA CATCGGTTTC AAATCTGATG GTATCGTTTC ATCCAATGAA
TTCCGCGACC TGCCAGGTTT GAAAATCGGC GACGAAGTGG AAGTTTATGT AGAGAACCAG
GAAGACGCAC AAGGTCAGCT GGTACTTTCA CGCAAAAAAG CGAAAGTTAT CACTGCATGG
GATAATATCC AGAAATCATT CGACGAGGAT GTTGTGATCG ATGCAAATGT GAAGAGAAGA
ACCAAAGGTG GTTTGATCGT TGATATTTTC GGCATTGAAG CATTCTTGCC AGGTTCACAG
ATCGATGTGA AGCCTATCCG CGATTTCGAC GTTTTCGTTG GAAAGCGCAT GGAAGTAAAA
GTTGTGAAAA TCAACTACGC GAACGATAAC GTAGTAGTAT CTCACAAAAT CCTGATCGAA
AAAGATCTTG AAGCACAACG TCAGCAGATC CTGAACAACC TTGAAAAAGG TCAGGTACTG
GAAGGCGTGA TCAAAAACAT GACCAACTTC GGTGTGTTCA TCGACTTGGG TGGTGTGGAT
GGTCTGTTGC ACATTACTGA TATCTCTTGG GGCCGTATCA ACCACCCATC TGACCTCCTT
TCACTGGATC AGAAACTGAA CGTGGTTGTG CTCGACTTCG ACGAAGAGAA AAAACGCATT
TCTTTGGGTC TGAAACAACT TCAGTCACAC CCATGGGATT CTCTGGACGA GTCAATCCAG
GTTGGATCGA AAGTTACAGG TCGCATCGTG AACGTTGCTG ACTACGGCGC TTTCTTGGAA
ATCAAACCAG GTGTTGAAGG TCTGATCCAC GTTTCTGAAA TGTCATGGTC TCAGCACCTG
CGCAATCCAC AGGAGTTCAT GAACGTGAAC GACGAGATCA GTGCGGTTGT ATTGACGCTT
GACCGTCAGG AGCGCAAAAT GTCCCTCGGC ATTAAGCAGC TTACCGAAGA TCCTTGGACT
CAAGGTTCAT TGAAAGAGAA ATATGCGATC GGTACCCGTC ACAAAGGTGT TGTTCGTAAC
CTGACCAACT TCGGTCTCTT CATCGAGCTT GAAGAAGGTA TCGACGGTCT GGTACACGTT
TCTGACCTTT CATGGACTAA GAAAATCAAG CATCCTTCCG ACTTCGTGAA AGTAAACGAC
GAGCTGGAAG TAGTTGTACT CGAACTGGAC GCGGACAACC GTCGTCTTGC TTTGGGCCAC
AAGCAGCTTG AAGAAAACCC ATGGGATACT TTCGAAAGCA TTTTCGAAGT AGGTTCAGTT
CACAAATCGA CTATCGTTGC GAAAGGTGAC AAGTTTGCCA CACTCGAACT TCCTTACGGA
ATCGAAGGTG TTGCTTCGAT CAAAAACCTG GCGAAAGAAG ACGGAACATT TGCTGAGGTA
GGTGAAAGCC TTGACTTCAC TGTTCTTGAA TTCCTGAAAG ACGAGAAGAA GATCGTTCTG
ACTCACTCTA AAGTTAAAGG TGTTCCTGCT GAGGAAAGAA AAGAAGCAAA AGCTGCCAAA
GCTCCTGCTG CTGAATCAGT GAACAAAGAA GTTGAGAAAT CAACTTTCGG AGACCTTAGC
GTTCTGTCTG CTTTGAAAGA GCAGTTCGAA GAGAGCGAGA AGAAAGGAAA AAAGTAA
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| Protein sequence | MSKEKQNQPL PEFDWDKASD KGFGTAYSSA DRTRLEQMYE TTLSPVSEKE VVKGVVVGIT
DREVILNIGF KSDGIVSSNE FRDLPGLKIG DEVEVYVENQ EDAQGQLVLS RKKAKVITAW
DNIQKSFDED VVIDANVKRR TKGGLIVDIF GIEAFLPGSQ IDVKPIRDFD VFVGKRMEVK
VVKINYANDN VVVSHKILIE KDLEAQRQQI LNNLEKGQVL EGVIKNMTNF GVFIDLGGVD
GLLHITDISW GRINHPSDLL SLDQKLNVVV LDFDEEKKRI SLGLKQLQSH PWDSLDESIQ
VGSKVTGRIV NVADYGAFLE IKPGVEGLIH VSEMSWSQHL RNPQEFMNVN DEISAVVLTL
DRQERKMSLG IKQLTEDPWT QGSLKEKYAI GTRHKGVVRN LTNFGLFIEL EEGIDGLVHV
SDLSWTKKIK HPSDFVKVND ELEVVVLELD ADNRRLALGH KQLEENPWDT FESIFEVGSV
HKSTIVAKGD KFATLELPYG IEGVASIKNL AKEDGTFAEV GESLDFTVLE FLKDEKKIVL
THSKVKGVPA EERKEAKAAK APAAESVNKE VEKSTFGDLS VLSALKEQFE ESEKKGKK
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