| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3319 |
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| Symbol | |
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| ID | 8226897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 4064332 |
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| End bp | 4065009 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644931150 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_003087695 |
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| Protein GI | 255037074 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGTAC ATTTGGGCAT GGTACCACAC CGCTACTTCA TTATCAACAA GCCACCCAAC
ATGGTTTCGC AGTTCGTCAG CTCGCATGAT GTGCGGTTGC TGGGGGAGCT GGATTTTGAT
TTTCCAGAAG GTACGCACGC CGTGGGGCGG CTCGATAGCA TGTCGGAAGG GCTGCTGATC
CTGACTACCA ACAAAAAAGT TACCAACTTG CTTTTCCTGG GCGAAGTGCC GCATACCCGG
ACGTACTGGG TGAATGTGGG CCATATCGTG CCACCGGAGA CGGTGCAGTT GCTGCGGACG
GGCATTCCTA TCCGCGTGAA GGGTGGCGGT TATTACACAA CAGCGCCCTG CGAGGTGGAG
GTCATCGAAC GCCCGGCGAT TTTGCCCTGG CATCAAAGCG AAGGCCAGCC CGGTGTGCCC
AACACCTGGC TGAGCATTAC CCTCACCGAA GGCAAATACC ACCAGGTTCG CAAAATGGTG
CGGGAGGCGA ATCACCGCTG TAAACGCCTC GTCCGGGCCA GTATCGAGGA TTTGGAACTC
GGCGATCTGC CGCCGGGAGG GGTGAGGGAA ATCGGGGAGG AGGAGTTTTT CAGATTGCTG
AAAATAGACA ACTGGAAGTC AGTGATTTCG TCCGGCGATT TGCGCCTGGA ACCGTCTGTC
GAAAATCAGG CATACTAG
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| Protein sequence | MIVHLGMVPH RYFIINKPPN MVSQFVSSHD VRLLGELDFD FPEGTHAVGR LDSMSEGLLI
LTTNKKVTNL LFLGEVPHTR TYWVNVGHIV PPETVQLLRT GIPIRVKGGG YYTTAPCEVE
VIERPAILPW HQSEGQPGVP NTWLSITLTE GKYHQVRKMV REANHRCKRL VRASIEDLEL
GDLPPGGVRE IGEEEFFRLL KIDNWKSVIS SGDLRLEPSV ENQAY
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