| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3223 |
|---|
| Symbol | |
|---|
| ID | 8226798 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 3951840 |
|---|
| End bp | 3953264 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644931052 |
|---|
| Product | surface antigen variable number repeat protein |
|---|
| Protein accession | YP_003087600 |
|---|
| Protein GI | 255036979 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCTA AGAAGTGCTG TCAGGAAATT TACTTTCTGC TATTAATCCT TTTGATCTCC
CATTTTGCCG CAGGCCAGAC CGCCGCTACC GATAGCACCG GGCAGGTCAT CGTGGGGGAC
ATTACCGTGG AAGGGAACCA CCGCACGCGC ACGGGTATCA TCATGCGTGA GATGGACATC
CGCAAAGGCG ATACGCTGAC CGCCGGGTTA CTGAAAGAAA AGCTGGAAAT CGACCGGAGA
AAGGTTGTGA ACACCAATTT ATTCGTCACC GTTGATCTCC TGACAAAATC TAGCCCCGAT
TCGCTCCGAA CCGATATCCG CATTGTGGTG AAGGAACGCT GGTATTTCAT TATCCTGCCC
GTTTTCCAGC TCGCCGACCG CAATTTCAAT GAATGGTGGT ACGAACGCAA ACGCGACCTT
TCGCGCACCA CTTACGGCGT TTATCTCAGC TATGGGAACG TCACTGGCCG GGCCGATAAG
CTTCGGTTTC TTGCGGAATT CGGTTTCATC CCCAAGTTCG AGGTGGCCTA TACATTGCCT
TACATCGACA AGGCCCAGAA AACCGGCATT ACCGTAGGGA CATCCTATTC CATCAACAAA
AACACCGCTT TCAGGACCTG GCGCGATAAA TTGCAATACC TCAGCAGCGA AGAAATCAAC
CGGGAACGCT TTTATACATA CGTGAGCCTG ACGAGGCGTA ACAAATATTA CACGTTTCAT
TCGGTCGATC TGCGGTGGAG TTATCTCACG ATTTCGGACA CGATAGCGGC GCTTAACCCC
AATTATCTGC TGAATGGGGA TAAACGGCAA CGCTATTTCC AGCTTACCTA CACTTACAGC
TACGACAAGC GCGACAATGT GCAATACGCA TTGCAAGGCC AAACCGCGGG CGTGCAGATC
TCAAAAACCG GGCTATTGCC ATCGGACGAC GTGAATACGC TGTATGTATA CGGATCGTAC
CGCAAATTCG TCCCGCTCGG CAAAAAATTC TATTTCAATA CCAACGTCCG CGGACGGCTT
TCTTTTCCAA AGCGCCAGCC TTACACGCAA ACGGTAGGCC TGGGTTACCG CAACGACCTT
GTGCGGGGAT ACGAGCTTTA TGTCGTCGAC GGCCAGGATT ATGCTTTGGT TAAAAATGAA
CTGAAATACA AGCTGTTTTC AATTCAAAAA CACTTGTCGT TCATTCCCGT GCGGCAGTTC
AACACCATCC CGCTCGCGGC TTATATTAAC ACGTTTGCGG ATGCCGGTTA TGTCAAAAAC
AGCTACCCGG AGTTCAGCAA CACCCGGCTG GGCAACTCGA TGCTGTACGG CGCCGGCGCA
GGGCTGGATG TGGTGACGTT CTACAACATC GTCGCGCGGT TTAATGTCAC GCTCAACGGC
CTGGGCGAGC GGCGGTTCTT TTTCAATCTC GCGCGGGAAT TCTGA
|
|---|
| Protein sequence | MNPKKCCQEI YFLLLILLIS HFAAGQTAAT DSTGQVIVGD ITVEGNHRTR TGIIMREMDI
RKGDTLTAGL LKEKLEIDRR KVVNTNLFVT VDLLTKSSPD SLRTDIRIVV KERWYFIILP
VFQLADRNFN EWWYERKRDL SRTTYGVYLS YGNVTGRADK LRFLAEFGFI PKFEVAYTLP
YIDKAQKTGI TVGTSYSINK NTAFRTWRDK LQYLSSEEIN RERFYTYVSL TRRNKYYTFH
SVDLRWSYLT ISDTIAALNP NYLLNGDKRQ RYFQLTYTYS YDKRDNVQYA LQGQTAGVQI
SKTGLLPSDD VNTLYVYGSY RKFVPLGKKF YFNTNVRGRL SFPKRQPYTQ TVGLGYRNDL
VRGYELYVVD GQDYALVKNE LKYKLFSIQK HLSFIPVRQF NTIPLAAYIN TFADAGYVKN
SYPEFSNTRL GNSMLYGAGA GLDVVTFYNI VARFNVTLNG LGERRFFFNL AREF
|
|---|
| |