| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3025 |
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| Symbol | |
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| ID | 8226599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 3700931 |
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| End bp | 3704317 |
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| Gene Length | 3387 bp |
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| Protein Length | 1128 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644930856 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003087405 |
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| Protein GI | 255036784 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.982637 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTAA TTACCTCCTA CCGCAGCGTG CTGCTGGGGA TGGTCGGGCT GTTGCTCGCC
ACCTGCCTGC ATGCGCAGAC GACCCGCCAG CTCACCGGCA AGGTGCTGTC GGACGACGAC
AAGCAACCGC TTCCGAACGT GACTGTTTTG CTGAAAGGAA AAAACATCGC CACCGAAACC
TCGCTCGAAG GTGATTACAC GATCGCGGTG AGCGGGGGCG ACGTGATCCA GTTCCGGATG
ATGGGCTATG TCATACAGGA AATGCCCGTA GGCACATCGG CGACGCTGGA CATTTTCCTC
AAACCCGACG TGTCCGCCCT GAATGAGGTG GTGGTAACCG GCTACGGCTC GGCCAGCCGC
ACGAAAATCA CTTCGTCCAT TGCCAAGCTG GATGCCAAAG TGCTCGAAAC CGGTATGCGC
GCCAACCCCG CGCAGGCGCT CGCGGGTACC ATTGCAGGCG TGCGGGTGTC GACGGCCACG
GGCAGGCCTG GGTCCATTCC CACCATCACC CTGCGCGGAG GTACCAATTT CGACGGCTCG
GGCAGCCCGC TCATCGTGGT CGACGGCCAG GTGCGCGGCT CGCTCAGCGA CATTAATCCC
GACGACATTG AAAGCATGGA AGTACTGAAA GATGCTTCGG CAACGGCCAT TTACGGTGCC
CGCGCGAGTA ACGGGGTGGT ACTGATTACC TCCAAAAGGG GCAAAGACGG TTTGTCGTCG
ATCACTTTCA AGGCTAAGAC TGGGTTCAAT TTCCTGAACA TCCCCTACAA TTACCTCAAT
GCGGAAGACT ACATTAAATG GACGAGGCTG GGTGTAGTAG AGGCGATCAG GAACGGGACG
GCCACTTCCA CCATGCTCTC GGGCATAGGC CCGCGCGGGA CGGGTAACCT CTATAAAGAC
GCTAACGGCG CGATCCTCGA CGGTAACTAC GATTCGCGGG CGATTTGGAG CACCATGCGC
CTGAACGACT CCAACCGCGA GCTGCTCAAT GCAAACCAGG GTTGGAGAAC CATGAAAGAC
CCGGTCAAAA CCAATGAGGC CGGAGCATAC GACCCGAACG GCACGAACGC AGACCTGATT
TTCAAGGATT TCAATTACGG GGATTATGCA TTCAAATCCC CGGCGATTTC GCAGGATTAT
AACATCGGCA TGAATGGCGG TAATGCAAAA GGAGGCTATT ATGCCAACTT GGGCTATTAT
AATGAAGACG GGCTCTCGCT CGGGACGTTT TACCGCAGGC TTACCTTCAC GCTGAATGGG
GATTACAAAA TCAAAAGCTG GCTGAAATCC GAAAGCAGCT TCAACTTTGC CCGGGCCAAC
TGGCGGGACC AGTCGCTGCA AAACGGCGAG GCCAACTACT GGGGCCGCAT GCTTTCGGCA
CCGCCTACCA TGCGCGGTAC CAATGCCAAC GGTGAGCTGA TCCTCGGCCG CGACGCCAGC
GACGGCAACC CGGTCCTCAA TTTCGACAAA TACAAAAGAA AGAACCAGTC CGACAAATTC
ACGCTCGGGC AGTCGTTCCA TGCGAACATT ACGGAAGATT TGTTCATCAA AGCAGGCGGC
ATACTCATGT ACGACGAAGC CGTGGCCGAA TCTTTCAACC GCGATTTCCG CATCGGGATC
ATGAATGCGG CCAATCCCAA CACCGGCTGG AACCGCGACC GCGCTTCGTC GGCGGGCTTC
GACCGCATTG TCCGCCAGAC CTACAATGCC GTGGCGAACT ACAAAAAGGC ATTTCTCGGT
AAAAGCTTCA TCGACGCCAT GATCGGCGGT GAATACTACC AGGAAGCCAC CAACGGTTTC
AACGCCGCCG GCCGCCTCGC GCCTACCGAC GATTTCCAGG ACCTTGGCCT GACGATCAAC
GACGCCAACA CCCGCACCAT CGACTCATAC CACACCCGCG AACGCATTAT ATCCGCATTC
GGCCGGTTGA ACTACGATTA CGATGGCAAG TACCTCGCTT CATTTACTGT GCGGCGCGAC
GGCTACTCGC GGCTCATCGG CGACAACCAG TTCGGCACGT TCCCGGCTGT TTCGGCGGGC
TGGCTCATGC ATCGCGAGGA TTTCATGGCT TCGACGCAAA AGTGGCTTTC GTTTTTGAAA
GTGCGGGCCA GCTATGGTAA AAACGGCAAC ATCGGCATTG GTACCAACAA CGGCATCGGT
GTGTACGAGT TGCAAGGCTC CTATGGCTCG CAGGCGGCCT ATAACGGTAG CATCGGCTTC
CTCCAAACCG GCGTGGCCAA CCCGAACCTG AAATGGGAGA AAAGCAATAC CGTGGAAGGC
GGCGTGGAAA TGGGCTTTTT CAATAACCGC ATTACTACCA ACATCGCCGT CTATAACCGC
GTCACAACCG ACAAAATCGC GAGCGTAATC CTGCCGACCT CTTCGGGCAT TGCGAGCATT
CGTACCAACA ACGGCAGCAT GCGCAACCGC GGCGTGGAAC TGGAAGGGGT TTTTAAAGCG
GTTCAAAAGA AAGATTTCAC GGTGCAGATC GGCGCCAATG CGGCCTGGAA CAAGAATAAG
GTGCTGAAAC TGCCTTTCAA CGGAAATGAA AACAACCGTC AGGGCGGCCA GCGCGTGTAC
GATCCACAAT CGGGCCGGAC CGTGTGGGCA GGCGGCTTGC AGGAAGGGCA GGAGTACGGC
GAGGTGTTCG GGTTTGTGAG CGAGGGCATT ATCCGCACGC CGGAGGATTT ATCCAGATAC
AATAAGATCG ACATTGCTGC GGGCGAGGTG CAATATGGCG CCGCTGCGGG CAAGCGTGTG
GCGAGCGAGG CGCTCATTTC CTCCAAAGGC CTCAGCCGCA CCACTTACAT TGCCACCCAG
CTCGGCGATA TGATGTGGAA GGATCTCGAT AACAACGACA CCATCGACAC CCGCGACATG
GTTTCGCTCG GGCGCACGAT CCCGCGCTGG ACGGGCGGTG TCAATGCGCA AATACGCTGG
AAAAACTTCT CGCTATTCGC CCGCATGGAC TTCGCATTGG GTCATATCCA GATGGATTTC
CAGCAAATGT GGTCGCTCGG CAGCTTCCAG GGCGAGTTCA ATTCAACCGA CCTTGTGAAG
GACACCTGGA CGCCGGAAAA CCCGAATGCG AAATACCCCC GCTACACCTG GGCCGATCAG
CTCAATTCCA AAAACTTCGA CCGGCCGAGC AGCATGTTTT GGGTCAACTC GTCGTACCTG
GCATTCCGGG AGGTGTCGCT GAGCTACTCG CTGCCCTCGG CGTGGCTGCA AAAGGCGAAG
ATTGGCGGCC TCACCGTCAC CGCTACCGGG CAGAACCTCG GCTACCTCAC CAACAGAATG
CTCGCATTAC CCGAGCGGAC CGGCAGCCAG AACAGCGCCT ACACGATTCC TACTTCCCTC
ATTTTTGGTG TAAACCTTAC ATTTTAA
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| Protein sequence | MKVITSYRSV LLGMVGLLLA TCLHAQTTRQ LTGKVLSDDD KQPLPNVTVL LKGKNIATET
SLEGDYTIAV SGGDVIQFRM MGYVIQEMPV GTSATLDIFL KPDVSALNEV VVTGYGSASR
TKITSSIAKL DAKVLETGMR ANPAQALAGT IAGVRVSTAT GRPGSIPTIT LRGGTNFDGS
GSPLIVVDGQ VRGSLSDINP DDIESMEVLK DASATAIYGA RASNGVVLIT SKRGKDGLSS
ITFKAKTGFN FLNIPYNYLN AEDYIKWTRL GVVEAIRNGT ATSTMLSGIG PRGTGNLYKD
ANGAILDGNY DSRAIWSTMR LNDSNRELLN ANQGWRTMKD PVKTNEAGAY DPNGTNADLI
FKDFNYGDYA FKSPAISQDY NIGMNGGNAK GGYYANLGYY NEDGLSLGTF YRRLTFTLNG
DYKIKSWLKS ESSFNFARAN WRDQSLQNGE ANYWGRMLSA PPTMRGTNAN GELILGRDAS
DGNPVLNFDK YKRKNQSDKF TLGQSFHANI TEDLFIKAGG ILMYDEAVAE SFNRDFRIGI
MNAANPNTGW NRDRASSAGF DRIVRQTYNA VANYKKAFLG KSFIDAMIGG EYYQEATNGF
NAAGRLAPTD DFQDLGLTIN DANTRTIDSY HTRERIISAF GRLNYDYDGK YLASFTVRRD
GYSRLIGDNQ FGTFPAVSAG WLMHREDFMA STQKWLSFLK VRASYGKNGN IGIGTNNGIG
VYELQGSYGS QAAYNGSIGF LQTGVANPNL KWEKSNTVEG GVEMGFFNNR ITTNIAVYNR
VTTDKIASVI LPTSSGIASI RTNNGSMRNR GVELEGVFKA VQKKDFTVQI GANAAWNKNK
VLKLPFNGNE NNRQGGQRVY DPQSGRTVWA GGLQEGQEYG EVFGFVSEGI IRTPEDLSRY
NKIDIAAGEV QYGAAAGKRV ASEALISSKG LSRTTYIATQ LGDMMWKDLD NNDTIDTRDM
VSLGRTIPRW TGGVNAQIRW KNFSLFARMD FALGHIQMDF QQMWSLGSFQ GEFNSTDLVK
DTWTPENPNA KYPRYTWADQ LNSKNFDRPS SMFWVNSSYL AFREVSLSYS LPSAWLQKAK
IGGLTVTATG QNLGYLTNRM LALPERTGSQ NSAYTIPTSL IFGVNLTF
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