Gene Dfer_2882 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_2882 
Symbol 
ID8226455 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp3548052 
End bp3549080 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content54% 
IMG OID644930712 
ProductTatD-related deoxyribonuclease 
Protein accessionYP_003087262 
Protein GI255036641 
COG category[R] General function prediction only 
COG ID[COG1099] Predicted metal-dependent hydrolases with the TIM-barrel fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones42 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0088223 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTGCCTCA ATCATAACGA ATTAGCTCAA AATCCTTCGC ATTTCGAAGA CAGCGAAGAA 
GCCAACCAGG CCCCTGCGCA CCGCGACATT GCCTGGAACG ACTACAAAGA CCTCATCAAA
GGAATGCGGT TTTTCGACCC ACACATCCAC ATGGTGTCCC GCACGACGGA CGATTACCAG
GCCATGAACC AGGCCGGTAT CGTGGCGCTC ATCGAACCCG CATTCTGGGT AGGGCAGCCG
CGCACGGGGT TGTCCACATT CAAAGATTAT TATAGCAGTC TGGTAGGATG GGAACGCTTC
CGTTCCTCGC AGTTTGGCAT AAAACACTAC TGCACGATGG GCCTGAACTC CCGCGAGGCC
AACAACGAGC CGCTAGCGGA GCAGGTAATG GAAATCCTGC CATTGTATAT TTATAAAGAA
GGCGTGGTAG GCGTGGGCGA GATCGGTTTC GACGACCAGA CGCCCGCAGA GGAAAAGTAC
TACCGCCTCC AACTCGAACT CGCGAAAGAA GCGAAACTGC CCGTGCAGAT CCACACGCCG
CACCGCGACA AGAAGAAAGG CACCGAGCGC AGCATGGCCA TTGCATTGGA ACACGGCATC
GACCCGTCGT GGGTGATTGT GGACCATAAC AATGAGGAAA CCGTGAAAAG CGTGCTTGAT
CAGGGATTTT ATGCGGCATT TACCATTTAT CCATTTACCA AAATGGGCAA CGAACGAATG
GTGAAGGTCG TGGAACAATA CGGCCCGGAG CGTATTATGA TCAACTCCGC TGCCGACTGG
GGCATTTCCG ATCCGCTCGC GATCCCGAAA ACGGCCGCAT TGATGAAAAT GCGCGGTATT
CCGGACGAAA CCATCCGGCT CGTGACTTAT CAGAATGCCA TTGATGCATT CGGCCAAAGC
GGGCAGATCG ACGTGACCGA TTTCGAATCG GGGTACGCGG TGGACCAGAC GGAAAAATTC
CATGGTAACA GCATTCTGCG GGGTGGCCAG CAACCTGCTC CGGTGAAGGA CTTTTTAGTG
ATCAATTAA
 
Protein sequence
MCLNHNELAQ NPSHFEDSEE ANQAPAHRDI AWNDYKDLIK GMRFFDPHIH MVSRTTDDYQ 
AMNQAGIVAL IEPAFWVGQP RTGLSTFKDY YSSLVGWERF RSSQFGIKHY CTMGLNSREA
NNEPLAEQVM EILPLYIYKE GVVGVGEIGF DDQTPAEEKY YRLQLELAKE AKLPVQIHTP
HRDKKKGTER SMAIALEHGI DPSWVIVDHN NEETVKSVLD QGFYAAFTIY PFTKMGNERM
VKVVEQYGPE RIMINSAADW GISDPLAIPK TAALMKMRGI PDETIRLVTY QNAIDAFGQS
GQIDVTDFES GYAVDQTEKF HGNSILRGGQ QPAPVKDFLV IN