| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2577 |
|---|
| Symbol | |
|---|
| ID | 8226149 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 3182357 |
|---|
| End bp | 3183220 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644930408 |
|---|
| Product | Pyridoxal-5'-phosphate-dependent protein beta subunit |
|---|
| Protein accession | YP_003086959 |
|---|
| Protein GI | 255036338 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2515] 1-aminocyclopropane-1-carboxylate deaminase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCAGCGGC TATCGAATGC CGACACTGAA AATGCTAGCG TACAGCTTTA TGTAAAGCGA
GATGACCTCA TTCATCCGGC GGTTTCGGGC AACAAATGGC GGAAACTGAA ATACAATCTG
CTCGACGCAC AAGCACGCGG CGAGCGGGCG GTGCTGACTT TCGGCGGTGC GTATTCCAAC
CATTTGTACG CAACCGCAGC GGCAGGCCGC GCGCTCGGCC TGGCCACCAT TGGCATTGTA
AGAGGGCTGG AACTAGAAGC CAAGGAAAAC CCCACGCTCC GGTTTTGCCG GGAGCAGGGC
ATGGAGCTGC ATTTCGTATC CAGGGCCGAG TACCGGCAAA AGGATTCGGT TGATTACCTC
GCACAGCTTT CGGAAAGATT CGGCGCGCCC TACATTGTTC CCGAGGGCGG CACGACGCGC
CTTGCCTTGC AGGGCGTAGC CGAAATGGTA TCCGAAATCA AAGAGCAGCT CGGTGCAATG
CCGGATTTCA TAGCCACCGC TGCCGGAACG GGCGGCACCG CGGCGGGTAT CCTCTCCGCC
GGAGCCGATG TTCTCGCTTT TTCTGCATTA AAAGGCGGCG ATTTTCTGGC TGACGACATT
CGTCAGCAGC TGGATGGTTA CACGCAATCA GGAACGCTTT CGTTGCTGAC CGACTACCAT
TTCGGCGGTT ATGCCAAATG GAATGAGGAA CTGCTCGATT TCATGCACGA CTTCGCAGCC
GAATTCGACG TCCGGTTGGA GCAGGTTTAC ACGGCCAAAA TGTTCTATGG CCTGTTTGAT
CTGATCAAAA GCGGGTGTTT TCAGCGGGGC ACGACCATCG TGGCCGTGCA TACCGGCGGG
TTACAGGGAG CGCTCAGCGC GTAA
|
|---|
| Protein sequence | MQRLSNADTE NASVQLYVKR DDLIHPAVSG NKWRKLKYNL LDAQARGERA VLTFGGAYSN
HLYATAAAGR ALGLATIGIV RGLELEAKEN PTLRFCREQG MELHFVSRAE YRQKDSVDYL
AQLSERFGAP YIVPEGGTTR LALQGVAEMV SEIKEQLGAM PDFIATAAGT GGTAAGILSA
GADVLAFSAL KGGDFLADDI RQQLDGYTQS GTLSLLTDYH FGGYAKWNEE LLDFMHDFAA
EFDVRLEQVY TAKMFYGLFD LIKSGCFQRG TTIVAVHTGG LQGALSA
|
|---|
| |