| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2302 |
|---|
| Symbol | |
|---|
| ID | 8225874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 2847232 |
|---|
| End bp | 2850522 |
|---|
| Gene Length | 3291 bp |
|---|
| Protein Length | 1096 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644930137 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003086688 |
|---|
| Protein GI | 255036067 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAGT TTTTCAACAC GGTCCCCAAA CCGTTGCACA TCATGAAAAT ACTAGGTGTT
CCCATATTTA TCCTCCTCTC GCTGGCGACG CTCGCCTTTG CCAGCGACGG AAGTGCGCAG
GATTTGATGA AAAGAACCGT GACGGCGCAG TTCAGCAACC GCGAGATTTC AAAGGCGCTG
ACGATGATCG GGCACAAGGC CAATGTGAAA TTCACCTACC TCCCCGGCAT TTTCCCGCCG
GACGCGAAGG TGTCGGTGAA AGTAAAGAAC GAATCGCTCG AAAACGTGCT CCGCGACCTT
TTGGAGCCTT ATAACATCGG TTACCAGACG AGCGGGGATT TTATCATTCT CCGGAAAAAC
AACTCCGGTG CCAAGCCTGG CCCGAAAGAC GAAGCCCGTG TACACCAGGA TATTACGGTA
AGCGGCAAAG TGACCGACGA TAAAGGCGAA GCCCTGCCAG GCGTGAGCAT TATCCTCAAA
GGCACTCAGC GCGGCACGGT AACGGACGTG GACGGCGGCT TTACATTCAA TATCCCCGAC
CAGTCGGCGG TGCTGGTGTT CAGCTACGTG GGTTACTCGC AGAAAGAGGT GACCGTAGGC
AGCCAGACGA CTTTCAATGT GCAGCTTGCC AATGACAACA AGGTGCTGGA AGAGGTGGTC
GTGGTGGGTT ATGGGGCTAT TAAAAAAGCG GATGTGACGG GAGCGATCGC TTCGGTGGAC
AATACTAAAA TCGCCCGCGC AGCCACGCCC GACGCTACCG GCGCATTGCA GGGACAAATG
CCGGGTGTGG TGGTGGTGAA AAACGTAGGC AAGCCGGGGA GCGGTTATAA TATCAATATC
CGCGGTATCA GCTCTATCGG CGGCTCCAAT TCGCCCCTGT ACGTGATCGA CGGCATTCCC
TCGACGACGG GTATCAACGA ACTCAACCCG GCCGACATCG AGAAAATCGA CATTCTGAAA
GATGCTTCTG CGACGGCCAT TTACGGCTCG CGCGGGGCGA AAGGCGTGGT GATCGTGACC
ACCAAACGCG GGAAATCGGG CAAGACGACC ATTTCCTACG ACGCCTATGC CGGCGTACGC
ACGCCCACGA ACCTGCCCGA GATGTTCGAC GGCCAGGAAT ATGTAGCCTT CCGCACCGAG
ATGTTCAAAG CACAGGGCAA GGATATTTCC CGCAACAATG CAGCGTTCTT CACACCCGAC
CAATGGCGGA ATATCGACGA AGGCAAGTTT ACCGACTGGC CGAAGCTGAT CCTCAAAAAC
GGCCTGCAAA TGAACCACAA CATTACCGCC AGCGGCGGCG ATGAGAAAAC CCGCTTCGCT
ATCAGCGCGG GGCTTTTGCA GGAAGACGGG AATGTGAAAC CCGAAAGCTT CAAGCGCTAC
ACTCTCCGCG GTAATGTAGA CCGCCAGATT ACCGACAAAT GGAAAGCGGG TTTGAATATT
TATTTTTCCC AAAACCTGCA AAACCTCGGC AGCTCCGAAG CGCTGCGCTC GGCTTACCGC
CTGCCGCCGA TGACCTACCC GTACGACGAA ACCGGCGCGC CCGCATTCCG TGTGTACACG
ACGAATGCAG TGACCAACCC GACGTTCGAC CAGGAAAATG AGATCCGTCA GGTGCGCAAT
GCCCGCACAT TCGGGAATAT TTTCGTGCAG TTCGAGCCGG TGAAAGGCGT GACTTTGAAA
TCGACCATCT CGCCGAATTA CTCTACCGAG AGAAGTGGAT TTTACTTTGG CCCGCTGTCC
AAGCAAAGCC TCGGCGGCTC GGTACCGACG CAGGCCGGCA ATGCCAGCAG CGAGCAGCTT
ACGTGGGTGT GGGATAATCA GGCCACTTAC GACCGGCAGT TCGGCGAGCA TAAGCTCACC
GCCACCATCG TGCAAAGCAT GCAGAAGGAC CGCATCGAAA CCAGCAACAT TACCGTGGAC
GGCATTCCGT ACAAATCGCT CTGGTACAAC CTGGCGACCG GCGGCCGGGT GCTGGCTTAC
GGCTCGAACT ACACCAAAAC GACGCTGGCT TCGGCAATGG GCCGGGTGAA TTACAGTTTC
AAAGACAAAT ACCTGCTCAC CGCCACCGGC CGTTGGGACG GCTCTTCGCG CTTAGCGGAA
GGTAACCAGT GGGGTTTCTT CCCGTCGGCT TCGGTCGCGT GGAGACTGTC GGAGGAACAG
TTTATCAAAC AAATACACCA GATCACCGAC CTCAAACTGC GCGTGAGCTA CGGGGTGACC
GGTAACGACC GCGTAAATGC CTATTCTACG CAGGCGGCAT TGGGACAGAC GTTCTATGAT
TTCGGCGGCA GTTTCGCGCA AGGCTACGCG CCTAACCAGC TTCCCAACAA GAACCTTACC
TGGGAAACGA CGCGGGAAGT GAATGTGGGC CTGGATTTCG GGTTTTTCAA TAACCGCATT
ACGGGTAGCG TGGATGTGTA TAACCGTTTG ATCAACAACA TCCTGCTGAG CCGTCAGCTC
CCCGCGCCGT CGGGCTGGGG CTCTATTATG GATAATGTGG GCAAGCTGCG GAACAGGGGT
ATCGAGCTGG GTATCAGTTC GATTAATGTG GTTGCGGGCA AGTTCCAGTG GAAGACCGAC
ATTGTTTTCG ACTCCAACAA AAACCGCATC CTGGAACTGA ACGGCGGCAA AAAGGACGAC
GTGGGTAACA GCCTGTTCAT CGGCCAGCCG GTGCAGGTGA ACTACAATTA CGTGTTCGAC
GGCATCTGGC AGACCGCCGA GGCCGAAGCC TCGAAAAAAT ACAACCAGAC GCCCGGCCAG
ATCCGCGTGA AAGACCTCGA TGGCAACGGC GTGATCAATG CGGCCGACCG GCAGATCATC
GGCAAGCGCG TTCCCAGCTG GACCGGTTCG CTTGGGAATA CATTCCGCTA CGGCAATTTC
GACTTGTACA TTCTCGTGTA CACCCGCCGC GGCGAACAAT ACCAGAGCTC GTTCGATGCG
ACGCTGATGA ACTACAACTC GGACTACAAC CAGGTGAAGG TAGACTACTG GACGCCGGAG
AACCCGTCGC AAACCTGGTT CCGTCCCGGC AATCCAGGCC CGTACACGGT GATCCCGACA
TTCCGCAAGG TGGATTTTAC GCGCGTGGGC AACATTACGC TCGGTTATAA CGTGCCTAAC
GGCCTTATTC AGCGCCTGAA AATCAGCAAT CTGCGCGTGT ACGCCACGGC TACTAACCCG
CTGCTGTTCA CCAAATATGA AGGTTTTGAC CCCGAATGGC CTGCTACCAA CACTTACGGC
ACGGCGGTGA GCACCTCGTC CTATCTTTTC GGCGTAAACC TGGCTTTTTA A
|
|---|
| Protein sequence | MQKFFNTVPK PLHIMKILGV PIFILLSLAT LAFASDGSAQ DLMKRTVTAQ FSNREISKAL
TMIGHKANVK FTYLPGIFPP DAKVSVKVKN ESLENVLRDL LEPYNIGYQT SGDFIILRKN
NSGAKPGPKD EARVHQDITV SGKVTDDKGE ALPGVSIILK GTQRGTVTDV DGGFTFNIPD
QSAVLVFSYV GYSQKEVTVG SQTTFNVQLA NDNKVLEEVV VVGYGAIKKA DVTGAIASVD
NTKIARAATP DATGALQGQM PGVVVVKNVG KPGSGYNINI RGISSIGGSN SPLYVIDGIP
STTGINELNP ADIEKIDILK DASATAIYGS RGAKGVVIVT TKRGKSGKTT ISYDAYAGVR
TPTNLPEMFD GQEYVAFRTE MFKAQGKDIS RNNAAFFTPD QWRNIDEGKF TDWPKLILKN
GLQMNHNITA SGGDEKTRFA ISAGLLQEDG NVKPESFKRY TLRGNVDRQI TDKWKAGLNI
YFSQNLQNLG SSEALRSAYR LPPMTYPYDE TGAPAFRVYT TNAVTNPTFD QENEIRQVRN
ARTFGNIFVQ FEPVKGVTLK STISPNYSTE RSGFYFGPLS KQSLGGSVPT QAGNASSEQL
TWVWDNQATY DRQFGEHKLT ATIVQSMQKD RIETSNITVD GIPYKSLWYN LATGGRVLAY
GSNYTKTTLA SAMGRVNYSF KDKYLLTATG RWDGSSRLAE GNQWGFFPSA SVAWRLSEEQ
FIKQIHQITD LKLRVSYGVT GNDRVNAYST QAALGQTFYD FGGSFAQGYA PNQLPNKNLT
WETTREVNVG LDFGFFNNRI TGSVDVYNRL INNILLSRQL PAPSGWGSIM DNVGKLRNRG
IELGISSINV VAGKFQWKTD IVFDSNKNRI LELNGGKKDD VGNSLFIGQP VQVNYNYVFD
GIWQTAEAEA SKKYNQTPGQ IRVKDLDGNG VINAADRQII GKRVPSWTGS LGNTFRYGNF
DLYILVYTRR GEQYQSSFDA TLMNYNSDYN QVKVDYWTPE NPSQTWFRPG NPGPYTVIPT
FRKVDFTRVG NITLGYNVPN GLIQRLKISN LRVYATATNP LLFTKYEGFD PEWPATNTYG
TAVSTSSYLF GVNLAF
|
|---|
| |