| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1803 |
|---|
| Symbol | |
|---|
| ID | 8225374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 2218658 |
|---|
| End bp | 2220196 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644929655 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003086207 |
|---|
| Protein GI | 255035586 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCATA TCAAATACAG ATTACCCCAG CTTATCCCGG CGCTCATGCT ATGCCTGCTG
AGTGCCTGCT CTACCGACTT TATTGACCAG GAAGATCCCA ATGCCGTTTC GAATGCATCC
TATTACCAGT CTCCCGGAGA CGTGGAGGCG GCTGTGAATG GCATTTACCA GTCGCTCCGC
ACCGGCAATG GCATTGGCGA AACCAGCGGA CTATACAGCG AAGAGCGCTC GGACAACACC
GGTCGCAACG ACAACCAGTC CAATGCCGGC GAGCCGTTCC AGTTCAATGA CTTCTCCCTG
CTGCCCAGCA ACACCTATCT CAAAACGCAC TGGCTTGCAT TGTACCAGAC CATTACGCGT
TCCAACCAGG TCCTCGAAGG CATTGAGAAG GTCACTTTTA CCGACAATAA CCTGAAAGAA
AAATACAAGG CAGAAGCCAA GTTCCTGCGC GCCCTGATCT ATTTCAACCT GGTGCGCAAA
TGGGGCGATG TGCCGTTGAT CACCCGGCCG CTGACGTTCC AGGAGGTGCA GGAAAATACT
TTCCGCGAAA AGCAGGATGT GGTGTACAAG CAAATCGTGG CCGACCTGAC CGACGCCGTG
AACAGCCCGC TGCCCGACAT CCAGACCGCT GCGCTCAAAG GAAAAGTGAC CAAGGCTGCC
GCCAATGCAT TGCTGGGGCA AGTGTACCTG ACCATGGCCA CGACCCAGGA CCAGGCCAGC
CGCACGGCCA ACCTCAATGA GGCTAAAAAA CACCTGATGG CATGTTACGA CCTGCGCACG
TTCGGGCTGC TGAAAGAAAT CCCTTATGCG GATGTTTTTG ATGTAGCCAA AAAGTCGACC
GTGCCGGAGA TCATCTTCCA GGTCGTAAAC AAGCAGGGCG ACATCAACTT CTCTTCGGCC
ATCGCCCGCA ACAACCAGGC AAGGGGCGAG ACGATCAACT CGCTGGTGAA TTCCACCGGT
GCAGGCGGCA ACGTCACGCC AGACCTGGTG CTGGACTACG AAGAAGGCGA TGTAAGAAAG
GATTTCAGCG TCAAATTCGC CAACGACCCG ATCGTACGCG ATTATTTCAT CACCAAATAC
CGCGATGCCA GTCCGGCTGC TACCAACCAG GGCTTCGGCG GCAACGACTG GATCCTGATC
CGCTACGCCG ACGTGATCCT GATGCTGGCC GAGGTGAACA TGTACCTGGG CGACGAGCCG
GCCGCCATCG GCTTCCTGGA CCAGGTCAGG GAGCGCGCGG GGCTGCCGCT GTACGCCGCT
TCCACGGCCA ACAACGCCTA CCGGACCAAA TACCCGACGC TCAAACTGGC GATCCTGCAC
GAGCGGCGCG CCGAGCTCGC ATTCGAAAAC CACCGTTGGT TCGACCTGCT CCGTTTCTTC
ACCACCGACG AGCTGGTCGC CTACTTCAAA GGCAAAAGTC AGGACAACTT CGGCCTCGCC
AAGCTCTCCA ACTTCGGCCC TAAGGACCGC TACTACCCGA TCCCGTTTGA CGAATACAAA
CTGAACCCGG AGAAAATGTA CCAGAACCCG GGGTATTGA
|
|---|
| Protein sequence | MFHIKYRLPQ LIPALMLCLL SACSTDFIDQ EDPNAVSNAS YYQSPGDVEA AVNGIYQSLR
TGNGIGETSG LYSEERSDNT GRNDNQSNAG EPFQFNDFSL LPSNTYLKTH WLALYQTITR
SNQVLEGIEK VTFTDNNLKE KYKAEAKFLR ALIYFNLVRK WGDVPLITRP LTFQEVQENT
FREKQDVVYK QIVADLTDAV NSPLPDIQTA ALKGKVTKAA ANALLGQVYL TMATTQDQAS
RTANLNEAKK HLMACYDLRT FGLLKEIPYA DVFDVAKKST VPEIIFQVVN KQGDINFSSA
IARNNQARGE TINSLVNSTG AGGNVTPDLV LDYEEGDVRK DFSVKFANDP IVRDYFITKY
RDASPAATNQ GFGGNDWILI RYADVILMLA EVNMYLGDEP AAIGFLDQVR ERAGLPLYAA
STANNAYRTK YPTLKLAILH ERRAELAFEN HRWFDLLRFF TTDELVAYFK GKSQDNFGLA
KLSNFGPKDR YYPIPFDEYK LNPEKMYQNP GY
|
|---|
| |