| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1791 |
|---|
| Symbol | |
|---|
| ID | 8225362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 2200791 |
|---|
| End bp | 2204324 |
|---|
| Gene Length | 3534 bp |
|---|
| Protein Length | 1177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644929643 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003086195 |
|---|
| Protein GI | 255035574 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.132082 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAC TTCTGGAAAT TTTAACGAAC GAATTTATGC AAAGAAAGGA ACGATTACAA
CTCCTGTTGT GGACGATTAT GAAACGCACC TTCTACCAGC TTCTGCTGCT CATTGTTTTT
GTAAGTATCG CTTCTGCCGA GACCATGAAA GCGCAGGATG TGCTCAGCCA AACTATTTCT
GTCCGGATCG TGGATCAGAA GTTCAAGCAC GCATTGCAGA TCATTGAGAA AAACTCCAAT
ATCAAATTCA TTTACAGCTC CCGGGTGATC GACGCCGAGC ATCGCGTGAA CCTCAATGTG
ACCAATGCAC CCGTGGCCCA CGTACTCGAA AGGCTGCTGA AACCCATGCA GCTGACTTAT
GAGGTTTCCG GCAGGCAAAT TGTGCTCGAC AAAGCCGAAA AGGCGGTGCA GCCGGCAGAA
AAGGAGCAGG GATTGCTGGA ACTGGACCTC AAAATTTCCG GTCGGGTTAC CGACCAGGCG
GGCGCAGCGC TGCCGGGTGT AAGTGTGGTG TTAAAAGGCA CGCAGCGCGG GACTGTCTCC
GATGTGGAAG GCCGCTATGA GCTGGATGTC CCCGATGAAC AGGCTACGCT CACGTTTTCC
TTCGTAGGGT ATATTTCTCA GGAAGAGGTC GTTGGAACAC GGCGCAGTAT CGATATTTCT
TTGAAAGTCA ATGAAAAAGC GCTGGAAGAT GTGGTGGTGG TGGGTTATGG TTCGCAAAAA
AGAAGAGATG TGATCGGCAG CATTTCGACG ATCAAGGCCG ACGTGCTGGA AACGCCTTCG
GGTTCTACGA ATTTCAGTGC ATTAATGCAG GGACAGGCGT CGGGGATCAA TGTGCAATCG
TCCTCGGGGC GGCTTGGGGC GCCGGTTAAC ATCACTATTC GGGGCCTCAG CTCGATCAGT
GCCGGAACCA GTCCGTTGTG GATTATCGAT GGCGTGCCTA TCTGGACGGA CATTTCGATC
GGCAACAATG GTTCGGCTGC CCAGTCGCCG ATGGCGCTCA TCAACCAGTC GGATATTGAA
TCCATTCAGG TTTTGAAAGA TGCGGCAGCC ACTTCCATTT ATGGCTCTCG GGGCTCGAAT
GGTGTGATTA TGGTCACCAC CAAATCGGGC GCCACAGGCA AAGCGAGCGT GAATGTGGAT
TACAGCACGG GCATTTCGCA GCTCCCTTTT CAACGTGTGG ATTTCCTGAA TACCCGGCAA
TGGTTTCAGA TGAAGGACGA GTCCAAACAG GCCTACGGAT TGGGCCGGTT CGAAATGAGC
GATTTTTATT CAAGCAAACC TTTTGCAAGC GAATTTCTCA CCCGCGAGCA GGCAGAGAAT
ATCAATACCG ACTGGCGCAA GGAAATGACG CGCACGGGAA GTTTTCATAA TGCGAATGTG
TCGGTGATGG GCGGCGATAA GCTGACCCGC TATTATGTGT CGGGGAATTA CCGGAAGGAC
AAGAGTATCA TGACCAATGA AGACCTGGAA AGATTCGGGT TACGGGCGAA TATTGATATG
AAACCCTTAA AAACGCTGGA CATCGGCGCC AAAATTAACC TATCTATGTC GAAAGGGAAC
CGCGGTAAAA ACGGGACGGC CAGCGAGGAC GGCAATAAAA GCGGTACGAA TGGCGGTTTC
AGTTTTGTAA ACACGATTAC AGTCCCGTTT GAACCCGTTT ACAGTCTCGA AAATCCTTCA
TTGTATTACA ATCCCTACAC CGGCAACCCC CGCGCCACCA GCGACCCGGA CAATATGGTG
GAGCAACTGG ATATGTACCG CGTGCTGACG GACATTTATG CCGAATACAA ATTCCGGTCT
CTGGAAGGCT TATCCGCCCG CACCCAGCTT TCGATGGATT TTGTGCAGGC CAACCGGAAC
TTCTGGGTGT CCGACGCCAT CCGTTCCAAT GGTTCGCTGG GCGAGGATAA TGCGTCTACT
TCCAAAAACA TCAATTACAA TGTATTTCTT ACCTACAACA AAAACTTCGG CGAGCACTCG
CTCAACCTCG TAGGCGGCAC CGAAGCGCAG CGTTCCAGCA CCTGGTACCG GAGTATGGAA
GGGCAAAACC TCGTGGGCAA TTATCAGCAA ATTGGCACGC CGGCCAACCT GACCACCTTT
TTCTCCGGGC TCAATGGCGA GCGTTATCTG CTGGCTTATT TCGGCAGGGC AAACTACAAG
TTCAAAGACA AATACCTGGC CGGTGTCAGC GTCCGTCGCG ATGGTTCATC GGTTTTCACT
TCCAAATACC GCTGGGGGAC TTTCCTGGCA TTTTCTGCGG GCTGGATCAT TTCCGACGAG
GCGTTCATGG GTGATTTCGG CCGGAACCAT TTCCTGAAAC TGCGCGGAAG CTACGGGCAA
ACCGGCAATG CGGGCATTCC GGGTTATCTG GATGTGTCTA ATTATGCCAA TCATTACGCT
TACGGCAGCG GCGACATTTT CGGGACGAAC GGGACGGTCA TTACGTCCAT TGGGGTCAAT
AATCTTTCCT GGGAAACGAC CAGCAATTTC GACGCGGGCC TGGACTTCGG GTTTTTCGGA
AACCGCATTA ACGGATCGCT GGCCTATTAT AATAAGTATG TCAAAGACCT GTTGCTCGCC
AGCACTTTGC CGACTTCTTC CGGCATCAGC TCGATTTGGG GGAATATCGG GGATTTGGTC
AACAAAGGGA TCGAGCTGAA TGTGACTTCT TCGAATCTGA AAGCGCGTAA CCTGAAATGG
CAAACCACTT TTAACATCGC ATTCAACCGC AATGAAGTCC GCAAACTCAC ACCGCAGGTC
GACCGGTCGG GAAAAGGAAT GGCTGTGCTG CCCTTTATTT CAAAGGTGGG TTACCCGGTT
CGGGATTACT ATCTCGCCGA TTTTGCCCAT GTAGACCCGC AAACAGGTAT TTCGCAGATT
TATGCATTGG ATAAGGAGCA TTATGCAGCC ACCGGTGAAA CGCGCCGGCT CAAAGATACC
GAGGGCCAGG ACGTGCTGCT GATCTCGAAC AGCGCGAATG TGAACGACAA TATGTTCCAT
CTCAAAAACA AGAACGGAAT TCCGAAATAT TACGGCGGCA TTACCAACCG GCTGAGCTAC
AAGAATTTCG ATTTCAGTTT CCTCGTCACA TTCTCCGGCG GAAATTATAT CTACGACATT
TTCCGGCGCG ACATTGCCGT GCAGAATTCA AACGGAGAGC AGTTGCAGGA TGTGTACGAC
AACTACTGGC GCAAGCCGGG CGACGTGGCC AAATACCAGC GACTGACCTG GAAAGGCAAT
GTGAAGATGG AAGATGGCAC CATCGTAGGT TTGGGCGACC CGCGCATTTA CACCGATCAG
TTTTTGTATA AAGGAGATTT TGTAAAGCTA AAATCGGTTT CGCTGGGCTA CTCCATCCCG
CGCCTGTCCG AAGAACGCCG TTTTCTCCAG AACATGCGGT TTTACGCAAC CTTCGAAAAC
CTTTATACCA TTACCCAATA TCCAGGCTGG GACCCCGAAG GGCAGAGCAC GGTTTATCAA
TGGGATTTGC CGCAACTCTT CTCGGCGACA CTTGGGGTAT CGATCAAATT TTAA
|
|---|
| Protein sequence | MSKLLEILTN EFMQRKERLQ LLLWTIMKRT FYQLLLLIVF VSIASAETMK AQDVLSQTIS
VRIVDQKFKH ALQIIEKNSN IKFIYSSRVI DAEHRVNLNV TNAPVAHVLE RLLKPMQLTY
EVSGRQIVLD KAEKAVQPAE KEQGLLELDL KISGRVTDQA GAALPGVSVV LKGTQRGTVS
DVEGRYELDV PDEQATLTFS FVGYISQEEV VGTRRSIDIS LKVNEKALED VVVVGYGSQK
RRDVIGSIST IKADVLETPS GSTNFSALMQ GQASGINVQS SSGRLGAPVN ITIRGLSSIS
AGTSPLWIID GVPIWTDISI GNNGSAAQSP MALINQSDIE SIQVLKDAAA TSIYGSRGSN
GVIMVTTKSG ATGKASVNVD YSTGISQLPF QRVDFLNTRQ WFQMKDESKQ AYGLGRFEMS
DFYSSKPFAS EFLTREQAEN INTDWRKEMT RTGSFHNANV SVMGGDKLTR YYVSGNYRKD
KSIMTNEDLE RFGLRANIDM KPLKTLDIGA KINLSMSKGN RGKNGTASED GNKSGTNGGF
SFVNTITVPF EPVYSLENPS LYYNPYTGNP RATSDPDNMV EQLDMYRVLT DIYAEYKFRS
LEGLSARTQL SMDFVQANRN FWVSDAIRSN GSLGEDNAST SKNINYNVFL TYNKNFGEHS
LNLVGGTEAQ RSSTWYRSME GQNLVGNYQQ IGTPANLTTF FSGLNGERYL LAYFGRANYK
FKDKYLAGVS VRRDGSSVFT SKYRWGTFLA FSAGWIISDE AFMGDFGRNH FLKLRGSYGQ
TGNAGIPGYL DVSNYANHYA YGSGDIFGTN GTVITSIGVN NLSWETTSNF DAGLDFGFFG
NRINGSLAYY NKYVKDLLLA STLPTSSGIS SIWGNIGDLV NKGIELNVTS SNLKARNLKW
QTTFNIAFNR NEVRKLTPQV DRSGKGMAVL PFISKVGYPV RDYYLADFAH VDPQTGISQI
YALDKEHYAA TGETRRLKDT EGQDVLLISN SANVNDNMFH LKNKNGIPKY YGGITNRLSY
KNFDFSFLVT FSGGNYIYDI FRRDIAVQNS NGEQLQDVYD NYWRKPGDVA KYQRLTWKGN
VKMEDGTIVG LGDPRIYTDQ FLYKGDFVKL KSVSLGYSIP RLSEERRFLQ NMRFYATFEN
LYTITQYPGW DPEGQSTVYQ WDLPQLFSAT LGVSIKF
|
|---|
| |