| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1640 |
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| Symbol | |
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| ID | 8225211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1988734 |
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| End bp | 1992051 |
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| Gene Length | 3318 bp |
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| Protein Length | 1105 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644929495 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003086047 |
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| Protein GI | 255035426 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000317861 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.245128 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGC TATTTTATCA TCTGAGCATC GTCGTCTGCC TGGCGGGGGC GTCGGTTGTG
GTGCAAGCAA AGCCCGCCGA AACGAAGCGG TCACGGTCCG AAAAATCGCA AGCCGGCCGT
CATGCCGAAC GGGCGGTGAA GGGTACCGTG AAAGACGACA AAGGCGAGCC GCTACCCGGA
GTGAGTGTGG TTATCAAAGG CACCACGCGC GGATCGCTCA CCGACGAGCA GGGAAATTTC
GAACTCGCTG TGCCTGAGCA AGGTGTGCAG CTTGTGTTTT CGTTTGTCGG TTATGTGCAG
CAGCAGGTTA CCGTCCAAAA CGAGTCGGTG CTGCAAGTGG TGCTGCTCCC TGATACCAAA
TCCCTCGAAG AATTTGTGGT GGTGGGCTAC GGTACGCAGA AGAAGAGCGA CATTACCGGC
GCGATTTCGA GCCTTTCGGA GGCCCAGATC CGCGAGCGGC CCGTGCAGAA TGTGGTGCAG
GCCATGCAGG GAAAGGTGGC CGGGGTGGAC ATCACCACCA ACCAGCGACC AGGCGAAGTG
GGACGAATCC GCATCCGCGG TAACCGGTCC ATCAATGCGT CCAACGAGCC GCTTTACGTG
GTGGACGGTG TGCCGCTTTC AGCCAGCGAG ATAACGGCCA TCAACCCGAA CGACATTGCA
TCCGTGGAAG TGCTCAAAGA TGCTTCTGCC ACAGCCATTT ACGGCTCACG CGGCGCCAAC
GGCGTGATCC TCATCAATTA TAAGGAAGGA AAAAAGGGTA AAACCAATAT CAGCTACGAC
GTGAGCTACA CGTCCACCCG CATTCATTCG ATGACCGACT GGATGAACTC CGGGCAGCTC
CTGAACTGGC AGCGGCAGTC GCATATTAAC GGCGGCACCT ACACCGGCAA ATACGGCACC
GCACCTGACC CGGATTTCGA CGTGCAGACG TTCGGAGGCG GCGAGGAGTA CGGCATGAAC
AGCATCCGAA CGGCCTATGA ATGGAATGAC GATGGCTCGG TAAAACTCCG CGCCGCCACC
GCCGAAGAGC AGGCTGCTGG CTATGCAGCG CAGGTCCCTG TATACAACGC CGCCAGCCTG
TTTGACCAGA AATGGGGCGA CCTCGTGACC CGCACCGGCC GGACGCAGAA CCACTTGCTT
TCGCTTTCGT CCGGCACCGA CAAGTCGCGG GTGTACCTCT CGCTGGGTTA TCTCAACCAG
CTCGGGACGT TGAAAGACCA GGATTTCAAC CGCTACACGC TCAACCTCAA AGGCGACATC
ACGCCCCGCA AATGGCTCAC GGTGGGCCTG GCGCTGAATG GCGTGTACTC GCTGCAGAAC
TACGGTACTT CGGAAAATTC CTCGAACAGC GGAGCCAAGG ACTCCTACGG ACAGGCGCTC
GCGCTCATGC CCTACGCCCG CGCATTCGAC GACAACGGCG AAATCCTGAA CACCAACCGC
GAGGGACTTT CGGCGCATAA CGTGCTGTTG AACATCAATA ACTCCACCAA CGAACACAAG
CTGGCTTCGC TGCTTTCGAA TGTGTACGCC GAGATCCGTT TCACCGACTG GCTGAAATTT
TCGAGCAAAT TCGGCGCGCA GTACAGCGAC AAGGAGTACG GCTCATTCTA CGGGTCCAAC
TACACCAATC CATTCAGCGC CGTGGGCACT GCGCCGCTGA TCGGCTACAA TTCGCATAAC
AAGTCGCTGG GCTGGACATT GGAGAACCTT TTGTTTTTTA ACAAACAAAT CGGGATACAT
AACATCGGCA TCACGGCACT GCAATCCTTG CAGCAGAATA CGAACAACGG GATCAACATC
CGCGCGCAGG GCATCACATT CCCATCGTCG CAGTGGTACA ACCTCGCCGC GAATGCGATC
GGTAACCCGA TGGGCTACGG CACTTCGTAC AGCCGCTCGG CGCTGGCTTC GTACATGGGC
CGCATCAATT ACGGATTGCT CGATCGCTTC CTCGTGACCC TTACCGGTCG CTGGGACGGG
GCTTCGGTGC TGGCCGAGGG CAACAAATGG GAGTTTTTCC CATCGGCGGC ATTGGCCTGG
AAGCTCGAAG AAGAGCAGTT TGTGAAGCAG ATCGACTGGA TCAGCCAGTT GAAGCTCCGG
TACAGCTGGG GACGTACCGG CAACTCGTCG GTAGCGGCAT ACTCTACCGG CGGTTCGATC
GTCGGTGCGG CTTATGTATT CAATGAAACC CAATATGCGG GTTACAAATC GGCGACGATG
CCTAACACTG CATTGCGCTG GGAAAAAACG GCTCAGCAGA ACATCGGACT GGATTTCGGG
TTGCTGAGAA ACCGGATTTC GGGGTCGGTG GAATTGTACA AGGCGCAAAC GAGCGATTTG
CTCATGTCGC GCTCCATACC GCCCGTGCTC GGTTACACGA GCATCCTGAG CAATGTGGGC
CGGACCGAAA ACCGCGGTGT CGAGATCACC ATTTCGAGCG TGAATGTGCA TCGGAAAGAT
TTTACCTGGC GCACGGATCT GAACTGGTCG GCAAACCGGG AGAAGATCCT CGAACTGACC
AACGGCGCTA CCGACGATCT TTCGAATGGC TGGTACATCG GTCAGCCGAT CTCCGTTTTC
CGGGATTACG CATATGACCG CATCTGGCAG AACACGCCGG AAGACCTGCG CCTGATCGAG
TTGTACAAGA AAATCGGAAA CATTACCGCC CTGCCGGGCC AGGTGAAGAT CAAAGACCAG
CCGCTGGTGG AAGTGGGCGA CGGCGCTGCC GGCTCCAAAT CCGTCACATT GGCAAGCGGC
GAGGTGGTCA ATTACCTGGA TAATGGTTTT GGCACGATCA ACGACAGCGA CAAATCCATC
CTGGGCAGCA ACCGCCCGTC GTGGACAGCC GGTTTGACCA ATACATTGGG TTACAAAAAC
TTTGAACTGA GTTTTCTTCT GCAAGCACGG ATCAACAACC TCTATTACGG CGCATTGCAA
ACGTACGGCC GCCGCGTGGA GAACGACACG TGGAGCCCGG CCAACACCGG TGCGGAATAC
CCGCAGCCGA CCACCGCGAC GTTCACCAAC TACAATTATG TACGGAACTA CGTGAACGGC
TCGCTGGTGG CGCTGCGCAA TGTGTCGCTT ACCTACACGC TCAACCAGGG CATTGCCGAC
CGCTACAAAA TCGGTAGTGC GCAGATTTAC GCGCAGGTGC TGAACCCGTT CATGTGGGGC
GGCGCGGCCG TGAAAGCGGG CCTTAACCCC GAGGACCTCA CCGGCTGGGA CACTACCGCC
GGCGCGCAGT CGGGCGGGCA GACCAACAAC ACCATCCTGA ACCGCAGCCT GGTGCTGGGC
CTGAGAATTT CTCTATAA
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| Protein sequence | MKQLFYHLSI VVCLAGASVV VQAKPAETKR SRSEKSQAGR HAERAVKGTV KDDKGEPLPG
VSVVIKGTTR GSLTDEQGNF ELAVPEQGVQ LVFSFVGYVQ QQVTVQNESV LQVVLLPDTK
SLEEFVVVGY GTQKKSDITG AISSLSEAQI RERPVQNVVQ AMQGKVAGVD ITTNQRPGEV
GRIRIRGNRS INASNEPLYV VDGVPLSASE ITAINPNDIA SVEVLKDASA TAIYGSRGAN
GVILINYKEG KKGKTNISYD VSYTSTRIHS MTDWMNSGQL LNWQRQSHIN GGTYTGKYGT
APDPDFDVQT FGGGEEYGMN SIRTAYEWND DGSVKLRAAT AEEQAAGYAA QVPVYNAASL
FDQKWGDLVT RTGRTQNHLL SLSSGTDKSR VYLSLGYLNQ LGTLKDQDFN RYTLNLKGDI
TPRKWLTVGL ALNGVYSLQN YGTSENSSNS GAKDSYGQAL ALMPYARAFD DNGEILNTNR
EGLSAHNVLL NINNSTNEHK LASLLSNVYA EIRFTDWLKF SSKFGAQYSD KEYGSFYGSN
YTNPFSAVGT APLIGYNSHN KSLGWTLENL LFFNKQIGIH NIGITALQSL QQNTNNGINI
RAQGITFPSS QWYNLAANAI GNPMGYGTSY SRSALASYMG RINYGLLDRF LVTLTGRWDG
ASVLAEGNKW EFFPSAALAW KLEEEQFVKQ IDWISQLKLR YSWGRTGNSS VAAYSTGGSI
VGAAYVFNET QYAGYKSATM PNTALRWEKT AQQNIGLDFG LLRNRISGSV ELYKAQTSDL
LMSRSIPPVL GYTSILSNVG RTENRGVEIT ISSVNVHRKD FTWRTDLNWS ANREKILELT
NGATDDLSNG WYIGQPISVF RDYAYDRIWQ NTPEDLRLIE LYKKIGNITA LPGQVKIKDQ
PLVEVGDGAA GSKSVTLASG EVVNYLDNGF GTINDSDKSI LGSNRPSWTA GLTNTLGYKN
FELSFLLQAR INNLYYGALQ TYGRRVENDT WSPANTGAEY PQPTTATFTN YNYVRNYVNG
SLVALRNVSL TYTLNQGIAD RYKIGSAQIY AQVLNPFMWG GAAVKAGLNP EDLTGWDTTA
GAQSGGQTNN TILNRSLVLG LRISL
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