| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1447 |
|---|
| Symbol | |
|---|
| ID | 8225018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 1715340 |
|---|
| End bp | 1715912 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644929306 |
|---|
| Product | Cupin 2 conserved barrel domain protein |
|---|
| Protein accession | YP_003085858 |
|---|
| Protein GI | 255035237 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0662] Mannose-6-phosphate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.901222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.428247 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACAC TTACCGTACC CGAACTCGCC CAAACCAAAT CTCTGCAACG CGTGATCTCC
AACCAGGAGT ACACCGTTAC CTTCCTCACC ACCGCCGCCG AAAGCCGCAA CAGGCTTACG
GAAATGGAAG TGGTACTGCT GCCCGGCGGC GGCAACGAGC TGCACACGCA CCTCAATTTC
GCAGAAACGT TTATCCCGGT TAAAGGCACC CTCGAAGTGC AGCTGGGCTC CAAGAAATTG
CTTCTCGAAC CCGGCGAGCG ATATACGGTG CCGGTGGGTG TGCCCCACAA TTTCACTAAC
CCGGGCAACA AACCAGTGCA TTTCCGGGTG GTGATCGAGC CGGGTCACGA GGGCTTCGAA
TACTCGCTGC GCATGCTCTA CGGCCTCGCG AATGCCGGCC GCGCCGATAT TCGCAACTGG
GACGACCTGA TGAGTGTGGC CGTTATCCTC GGGATCAGCG AAATGCGGCT TTGTGGCAAA
AAGGCGATCC TTAACCCATT CATCCCGCTG CTGTACCGCG TGGCACGCAG GAAAGGCATC
GAGGAGGAAA TGATCCGGAA GTATTGTGTT TAG
|
|---|
| Protein sequence | METLTVPELA QTKSLQRVIS NQEYTVTFLT TAAESRNRLT EMEVVLLPGG GNELHTHLNF
AETFIPVKGT LEVQLGSKKL LLEPGERYTV PVGVPHNFTN PGNKPVHFRV VIEPGHEGFE
YSLRMLYGLA NAGRADIRNW DDLMSVAVIL GISEMRLCGK KAILNPFIPL LYRVARRKGI
EEEMIRKYCV
|
|---|
| |