| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1220 |
|---|
| Symbol | |
|---|
| ID | 8224791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 1447867 |
|---|
| End bp | 1449066 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644929082 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_003085634 |
|---|
| Protein GI | 255035013 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0163733 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0019262 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGG ACAACCTGAA ATACTTTTCA ATTGCGATCC TCATCGCGCT CGCGGGACTC
GAACAGTCGT GCGAGAGCGA CGCGCGCACG TCCACGCGCA TTCCGCCGGT GATCAAAAAG
GGGAAGGAAC AATGGCAAAA GGACGCATTG CTCTCACTGA CCGAGCTCAT CAACCGCGGC
ATCGATTCGG ATGTCAATTA TTTCAAACGG GCCCGAATTT ACTTCGAACG CGAGCAGTAT
GCGGAGGCGC TGGACGACAT CAATGAGTCT ATCTACGAAC AGGATAATGT GAGCGAATAT
TTTCTTTTAC GTGGCAAAAT CAATCGTGAA CTGGGAAATA TCGATAATGC ATTGGAGGAC
GCGCAGCGCG CCGAGGCATT GCAGCAAAGC AGCCCGGAAC TGTATGTGCT ACTGGCGGAC
ATCCTGCAAG CCAAAAACCG CTTCGGCGAA GCGGCCGGTT ACTTGAACCA GGCATTGCGA
ATGGCTCCTT ACGATGGTTC GGCCTATTAT GTAAAAGGAA TGTTGCAGGC CAAGCAAGGC
GATTCGCTCG CCAGCCTGTC GAGCCTGAAT TACGCCATGA ATGTAAACCC GCGGCTACTG
AGGGCTTACG AGCAGGGCAC AATCATTAAT CTAAAGCTCA AAAACACGGC GGAAGCGCTG
GCGATCAACG AAAAGGCGCT GAACCGCTTT CCCGAACGTG CCAGCCTTTT TTACGGTCGG
GGCGAAATCC TGAATGCACT GGCCCAGCCG GACACCGCAT TGATTTTTTA CCAGAAAGCA
TTAGCCATTC AGCCCGACTA CGACGAAGCA TTGAATGCGC TGGCGACCGT AGCCATGCAG
CAGCGCGCCT ACCCGGCCGC CATTCCTGCA TTGAAAAAGC TTTTACGTAA AAAACCGCAG
TCCAAAGAGC TGAACAACAT GCTCGGCTAC GCCTACGAAA AAAGCGGCGA ACTGGACCTG
GCCAAGACGT ATTACACCAC GTCGCTTACC ATCGCGCCCG GCGACCAGGA TGCGCGCTAC
GGCATGTACC GCATCCGGAA GATCGAGTCG GAAGGGCTTT ACCCCTCCTA CTATCCTGAG
GAAAATACCA GGGATGGCTA TAAACTGCTC GATACATCAC GGGTTAAAAT CAATATAATC
CAACCGCGCG GCACCACAAA TATCCGCGTG GACTCATCAC GCAAAGCTAA AATTGAATAG
|
|---|
| Protein sequence | MKPDNLKYFS IAILIALAGL EQSCESDART STRIPPVIKK GKEQWQKDAL LSLTELINRG
IDSDVNYFKR ARIYFEREQY AEALDDINES IYEQDNVSEY FLLRGKINRE LGNIDNALED
AQRAEALQQS SPELYVLLAD ILQAKNRFGE AAGYLNQALR MAPYDGSAYY VKGMLQAKQG
DSLASLSSLN YAMNVNPRLL RAYEQGTIIN LKLKNTAEAL AINEKALNRF PERASLFYGR
GEILNALAQP DTALIFYQKA LAIQPDYDEA LNALATVAMQ QRAYPAAIPA LKKLLRKKPQ
SKELNNMLGY AYEKSGELDL AKTYYTTSLT IAPGDQDARY GMYRIRKIES EGLYPSYYPE
ENTRDGYKLL DTSRVKINII QPRGTTNIRV DSSRKAKIE
|
|---|
| |