| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1006 |
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| Symbol | |
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| ID | 8224576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 1178056 |
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| End bp | 1181172 |
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| Gene Length | 3117 bp |
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| Protein Length | 1038 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644928867 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003085420 |
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| Protein GI | 255034799 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0320899 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.449755 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGTGC TGCTGCTCAT GCTGGGTTGC AGTGCGGTTT TTGCCCAAAA CAGCCGGATC
ACCGGGACCG TCACCGGCGA CAGCAAGGAA GTGCTGCCCG GCGTGAATGT CCTGGTTAGC
GGCACGTCGC AGGGCACCGT TACCGACTCC GAGGGCAAGT ATGCGCTCGA AGCTCCGGCC
AAGGCGTCGC TCGTGTTTTC GTTTATTGGC TACACCAGCC AGACTGTGGC CGTAGGCACA
CGGTCGGTGA TCGACATCCA GCTCGTGCAG GAATCCAAGA GCCTAACAGA AGTGGTAGTT
ACCGCACTGG GTATCAAGCG GGAAGCCAAA ACGCTCGGGT ACGCCACAGC CACCGTGAAT
GCAGACCAGA TCTCCACCAA CCGCACGCCC AACGTCGTGA GCTCTTTGCA GGGAAAAATG
GCGGGTGTGA ACATTTCGTC GCTATCCACC GGCCCGGGAG GCACGGCCAA AATCCGCATT
CGCGGGCAGT CGTCGTTCAA TGGGCAGAAC AACCCGCTCA TTGTCGTGAA CGGTGTGCCG
ATCGATAATT CCAACTTCGC CGGCGGCGGT GACTATGGGC AGCGCTCGGC CAACAATTCC
GACGGCGGCG ACGGCTTGTC GAGCATTAAC CCCGACGATA TCGAGTCCAT GACGGTGCTC
AAAGGCGCCA CCGCGGCAGC GCTTTACGGC TCCCGCGCGA AGGACGGGGT GGTGATGATC
ACCACCAAAA CCCGCGGTAC CGGGCAGGGG ATCGGCGTGG ATTATAACCT CAACTTCACC
ACCGATACGC CGTTGGATTT CACTGATTTT CAGTACGAAT ATGGCCAGGG AGAAGGCGGA
AAACGCCCTA CCACCGAAAA TCCGACGTCG GGTGTGTGGA GCTTTGGAGA GAAATTCCAG
CCGGGCATGA CGCAGGTGCT GTTCGACAAC GAAACATGGC CCTATGAGCC GGTGCGCGGC
CGTGTGAAGA AATTCTATCG CACAGGCACG AACATGACCA ACACCATCAC CGTGTCCAAT
AATGGCCCCA ATGGCGGTTT CAGCCTTTCG CTCGCGAATA CCGACAACCG CGGCATTGTC
GAAAACAATA AATTCAACCG CAAGGTGGTG AACCTGGGCT TCACGCAAAA CATTTCCAAA
CGCCTCACAG CATTCGGAAA CGTGAATTAT TCCAAGGAAA AGAATGTGAA CCCGCCGCAG
ATCGACGCCC AGGATTTTGC TACTTCCACG GTGATTTTTA CATTGGCTAA TTCCATGCCC
TTCGAGGCAT TGAAACAAAA CCAGACACTG CCGAACGGCG ATGAGTTCGT GTTTTCAAGG
TTTCTGGTGC GGAATAACCC GTATTATTCG CTCAGCAAGC ATTTCGAGAA CATCACCCGC
GACCGGCTTT TCGGCAATGT AGCGGTGAAG TACCAGTTTA CCGACTGGCT CTACCTGCAA
CTCCGGGCGG CGCAGGATTT TTACGTCCGC AACCAGGACT ACAACATTCC GAACGGCTAT
GCGCCCATTG CCAAAGCACC TGTGGGCTAT GTAAACGGCT CATTTACACA GGATGTACGC
CGCAACACCG AGCGTAACCT TGACTTTATT CTCGGCGGCA ACCACACATT CGGCAACCTG
GGCCTGGATG TGACCCTGGG TGGAAACCAG CGCTATGCCC GCATGGATTA CAACAGTGTT
ACCGTGCAGG ACTTCATTCA GCCCGGCTTG TACACGGTGA TGAACGGACG CGTCAAAAAC
CCGCTTTATA ACCTGTCCGA AAAGAAGATC AATTCGCTGT ACGGAGCGGC TACTATTTCA
TGGAAAGAGT TCCTCTACCT GAACGTAACG GCCCGAAACG ACTGGTTTTC AACCCTTGCG
CCACAAAACC GCAGCATTCT GTATCCTTCG GTAACCGGTA GCTTCATCTT CTCCCAGGCA
TTCCCGAACC TCCCGGCCTG GATCACATTC GGCAAGTTGC GCGCGGCATA TGCACAGGTG
GGCTCGGATA ACGTGAACCC TTACTCGAAT GCATTGTATT ACGCGGTGGA TAACAATTCT
TTCCCTAATC CATCGGGCCA GCTCGTGCCG GTGGGCGGCA TTAATGCGTC CCTTGTCCCC
AATAAGGACC TGCGTCCGCT GCGCATCAAG GAAGCCGAAG TAGGTCTGGA AATGAAGTTG
TTCAACAATC TCCTGGGTTT TGATTTAACA TACTACCACA AAACTACTGA CGATCAGATA
CTTGCAGCGC AGATTTCCGA CGCGTCGTCC TACACCGCGC AGCTCATCAA TGTCGGCCGG
AGCATGAACC AGGGCATCGA ACTGCTGCTC ACGGGGTCGC CGGTGAAAAC GAAGGATTTC
AGCTGGGATG TGAGTTTCAA TGTGTCGTAC AATAATTCGA AAGTGCTCAA ACTCGGTCTG
GCGGAGAAGG ATACAGTCAT TACCGCAGGT GGAGGTGGTG GCCGCACGCT TAATATGGTC
GTAGGGAAGC CGCTGGGCCA GCTGTACACG TTCACGTACC TGCGTGACGC GCAGGGCCGG
CAGGTGTTCG ACAAAAACAG CGGTATGCCC ATGCGGAACA ACACCCTGAT GAATGTCGGC
AATGCATTGC CGCGGTATTT TGGAGGGATT ACCAATACAT TCAACTACAA GGGCATTACG
CTCTCCGCGT TGATCGATTT CAAACTGGGG CACAAGATGA TTGCCGGACG GAACATCAAC
TACATGCGTC ACGGGCTCTC GAAACGCACG CTGCCCGGCC GCGCCGAAGG TTTTGTGATC
GGTAACGGTG TGAATCCCGA TGGCGAGGTG AACCAGACCA AAGCCGCCGT GCAGCCATTC
TACGAATCGA TCAACCCGCT GGGGATCAAT GAGGATTTTG TATCGAATGC GGGTTTCTGG
AAGCTGCGGC AGCTCACATT GGGCTACGAC TTGGGCAAAC TGCTGCCTGA AAAATCGTTT
GTGAAAGGCC TTCGCCTGAG CGCCGTAGCG AACAATGTGC TGGTGATCAA AAAATGGACG
GAAAACATGG ACCCCGAGGA AGTGCTCAAC TCTTCCGACA ATGCCACCGG CCTCGATTTC
TGGCCAGGCT TGCCGCCAAC CCGCAGCATT GGTTTTAACC TCAATGTCAA ATTCTAA
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| Protein sequence | MLVLLLMLGC SAVFAQNSRI TGTVTGDSKE VLPGVNVLVS GTSQGTVTDS EGKYALEAPA
KASLVFSFIG YTSQTVAVGT RSVIDIQLVQ ESKSLTEVVV TALGIKREAK TLGYATATVN
ADQISTNRTP NVVSSLQGKM AGVNISSLST GPGGTAKIRI RGQSSFNGQN NPLIVVNGVP
IDNSNFAGGG DYGQRSANNS DGGDGLSSIN PDDIESMTVL KGATAAALYG SRAKDGVVMI
TTKTRGTGQG IGVDYNLNFT TDTPLDFTDF QYEYGQGEGG KRPTTENPTS GVWSFGEKFQ
PGMTQVLFDN ETWPYEPVRG RVKKFYRTGT NMTNTITVSN NGPNGGFSLS LANTDNRGIV
ENNKFNRKVV NLGFTQNISK RLTAFGNVNY SKEKNVNPPQ IDAQDFATST VIFTLANSMP
FEALKQNQTL PNGDEFVFSR FLVRNNPYYS LSKHFENITR DRLFGNVAVK YQFTDWLYLQ
LRAAQDFYVR NQDYNIPNGY APIAKAPVGY VNGSFTQDVR RNTERNLDFI LGGNHTFGNL
GLDVTLGGNQ RYARMDYNSV TVQDFIQPGL YTVMNGRVKN PLYNLSEKKI NSLYGAATIS
WKEFLYLNVT ARNDWFSTLA PQNRSILYPS VTGSFIFSQA FPNLPAWITF GKLRAAYAQV
GSDNVNPYSN ALYYAVDNNS FPNPSGQLVP VGGINASLVP NKDLRPLRIK EAEVGLEMKL
FNNLLGFDLT YYHKTTDDQI LAAQISDASS YTAQLINVGR SMNQGIELLL TGSPVKTKDF
SWDVSFNVSY NNSKVLKLGL AEKDTVITAG GGGGRTLNMV VGKPLGQLYT FTYLRDAQGR
QVFDKNSGMP MRNNTLMNVG NALPRYFGGI TNTFNYKGIT LSALIDFKLG HKMIAGRNIN
YMRHGLSKRT LPGRAEGFVI GNGVNPDGEV NQTKAAVQPF YESINPLGIN EDFVSNAGFW
KLRQLTLGYD LGKLLPEKSF VKGLRLSAVA NNVLVIKKWT ENMDPEEVLN SSDNATGLDF
WPGLPPTRSI GFNLNVKF
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