| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0990 |
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| Symbol | |
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| ID | 8224560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 1155472 |
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| End bp | 1157748 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644928851 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_003085404 |
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| Protein GI | 255034783 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.91831 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.661776 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTGACA ACTTTTTGAG TCAGGTATTC AAATCCTTAC CCGCGCCGAG CCTGGTACTT
CTGGCGGACG TTCCGAAATT TACGATAGCC GAGGTGAACG ACGCTTACCT GGACCTGGTA
CAGCTCACGC GCGCGGAACT TATAGGAAAG GGTTTTTACG ACGCATTCCC TAACAACCCC
TATAACCGCG TGCCGCCCTG GAACAACCTG CTCGAAAAGC TGGTTGCCGA CGGCCTGCCC
AACCAATCGC CGGTTTCGAA ATACATACTG CCGCCGCGTG ACGGAGAACA GACGGTCGTG
AAGTATTTAC TCGCGACGAA CACACCCGTG CGCAACGAAG CGGGCGAAGT ATCCCATATC
CTGCGGACCG TAACGGACGT AACCGAAATG ACGCTCGCCA GGCACACGCA TTCCCCTTTC
ACCTCCGAGA AATTTTTGGA CGAAACCCTG CGGATCGCAC GCGTGGGCAG TTGGGAGGTG
GATGTGATCA ATGAGGTAAT CAGCTGGTCG GATGTGGTGA AGGAAATACA CGAAGTACCG
GCCGACTACC AGCCCGACTT TTTCACGACC ATGGACTTCT ACCGTCCCGG CGAACACCGC
GACGCATTCA TGCAGGCCAT GCAGGAAACA ATTGTCAGCG GCAGGCATTT CGACCTCGAA
CTGGTCATCA ATACCTTCCG GGGTACCGAA AAATGGATTC GTGTGACAGG AAAATCCGAA
ATCGTAGAAG GCGTTTGCAC GCGCATTTAC GGGGTAATCC AGGACATTCA TGAACAAAAA
ATGATAAGCC AGGAGCTGCT GCGTTCGCAC GGGCAGCTGG AATCGCTCAT ACAAACCGTG
GACGGGATCG TGTGGGAGGC CGATGTGGCC ACTTTCGAGT TCAAGTTCGT GAGCGATCAG
GTAAGGAATA TATTGGGCTA CACGCCCGAG CAGTGGCTGA ACGACCCGAT GTTTTGGGAA
AACCACATTT ACCCGGAAGA CCGCGAACAG GCCGTGCGCT ACTGCCACCG CGAAACGCGC
GAAATGCGCA ACCATGCCTT CGACTACCGG ATGCTCAAAG CAGATGGGAG CCTGGTGTGG
ATCAAAGACG TGGTGTCGGT GATCCGCGAA AATGGCGAGG CGGTGATGCT GAGGGGCATT
ATGGTCGATA TCACGGAGGC CAAGCGGCTC GAAAGCCTCG AACACCTCGA AAAAGTGGTG
CTGGAAATGA ACTCCGTCAA GCATACGCCG CTGCGGAGTG TACTGGAAAA ATATGTCCGA
GGGGTGGAAG TATTGTTTCC GCAGTCACTG TGCTCGTTGC AGGCGATTGA GAACAACAGA
TTGCGCAACC TCGCGTCGCC CTCGCTCCCG GCAGCATACG TGAGCGCACT CGAAGGCCTT
GAAATGGGGC CCAATTCGGG TTCCTGCGGC ACGGCGGCAT TCCTGCGCAG GCCGGTGGTT
GTGAGTGATA TCGCCACGGA CCCGCGGTGG GACAGCTACC GCCACCTGGC CCTGCCGCAC
CATTTGCTGG CATGCTGGTC GTATCCGGTG GTCCTTGGCG ATGAAACAGT GGCCACTTTT
GCCGTGTATT ACAACCGCAT TGCCGAGCCG GGCGAAGACG AGCTGAAAGT GATCGAACGC
GTGGCAGCAA TATTAAAGGT AATATTCGAA AACAAGCAGA ATTCCGAGTT GGTGGAGGAC
GTGAATGAGC GCTATGAATA CGTGAACATG GCTACCAACG ATGCGATTTA CGACTGGGAC
CTGCAAACCG ACCATATCGA ATGGGGCGAC GGCTTTTTCC GCGTTTTCGG CGACGAACCG
AGCCCGACGC GCTATCCGCT CGCACGTTGG GCCGAACGCG TGCATCCGGC CGACCGCGAG
GCGATCTCCG AAAGCCTCGG TATCCAGCTC GCCGACCCGC AGCAGCACAA GTGGAGCGCC
GAGTACCGTT TTAGAAAGAA CGACGGCGAC TATGCGCAGG TGGAAGAAAT AGGCTACATC
AAGCGCGATT ACCTGGGCCG CGCCGTGCGG ATGATCGGCG TTTTGCGGGA TGTTACCGAT
CGTTTCAGGT ATGTGAGCGA AATTGAAGAG CGCAACCACA AATTACAGGA AATAGCCTGG
ATGCAATCGC ATGTGATACG CGCGCCGCTC GCGAGGCTGA TGGGCCTCAT TGACCTCATC
CGCAACTACC CGCATTCGGA TTCGGAACGG AACGAGCTGC TGGATCACGT TCTCACCTCG
GCCCATTCGC TCGACGAGAT TATCCGCGAT ATTTCTTCGA AAACCGAGGA AGTTTAG
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| Protein sequence | MVDNFLSQVF KSLPAPSLVL LADVPKFTIA EVNDAYLDLV QLTRAELIGK GFYDAFPNNP
YNRVPPWNNL LEKLVADGLP NQSPVSKYIL PPRDGEQTVV KYLLATNTPV RNEAGEVSHI
LRTVTDVTEM TLARHTHSPF TSEKFLDETL RIARVGSWEV DVINEVISWS DVVKEIHEVP
ADYQPDFFTT MDFYRPGEHR DAFMQAMQET IVSGRHFDLE LVINTFRGTE KWIRVTGKSE
IVEGVCTRIY GVIQDIHEQK MISQELLRSH GQLESLIQTV DGIVWEADVA TFEFKFVSDQ
VRNILGYTPE QWLNDPMFWE NHIYPEDREQ AVRYCHRETR EMRNHAFDYR MLKADGSLVW
IKDVVSVIRE NGEAVMLRGI MVDITEAKRL ESLEHLEKVV LEMNSVKHTP LRSVLEKYVR
GVEVLFPQSL CSLQAIENNR LRNLASPSLP AAYVSALEGL EMGPNSGSCG TAAFLRRPVV
VSDIATDPRW DSYRHLALPH HLLACWSYPV VLGDETVATF AVYYNRIAEP GEDELKVIER
VAAILKVIFE NKQNSELVED VNERYEYVNM ATNDAIYDWD LQTDHIEWGD GFFRVFGDEP
SPTRYPLARW AERVHPADRE AISESLGIQL ADPQQHKWSA EYRFRKNDGD YAQVEEIGYI
KRDYLGRAVR MIGVLRDVTD RFRYVSEIEE RNHKLQEIAW MQSHVIRAPL ARLMGLIDLI
RNYPHSDSER NELLDHVLTS AHSLDEIIRD ISSKTEEV
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