Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_0988 |
Symbol | |
ID | 8224558 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 1151718 |
End bp | 1153565 |
Gene Length | 1848 bp |
Protein Length | 615 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644928849 |
Product | DNA mismatch repair protein MutS domain protein |
Protein accession | YP_003085402 |
Protein GI | 255034781 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.928875 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.94372 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGAGA CATTTAAAGA AAAGGCGCGG CAGTACAAAG TCATCGCGGA AAGCCTGGTA CCCCAGCTCA ATAGCCTGTC ACTGGCCCGT CTGGGCGTTT TTCTGGCAAC GGGTATTTTG ATACTATTCT TTGCCGCCAA TGGCTGGGTA ATTCCCGTGG TGGGAACGGC GGTAGCGGGC GCTGTGCTGT TCATGGTGAT CCTGCGCAGA TATGACGAGC TTTCTGGTGC CAAGCGGAAG GCGGAGCTTT TGAAGCAAAT CAATGAGGAC GAAATCCTGC GTGCGCAGCA CCAGCTGGCA AGCTTCCCTA CCGGCGATGC TTTCCTGCAC CGCGACCAGG ACTACGCGGC CGATCTGGAC ATTTTCGGGC ATCATTCGCT ATTTCAACTC CTCAACCGCA CCACCACCGA ATCGGCCGCG CGGATGCTTG CGCACTGGCT CACATCCCCC GCCGACCGGC AAACCATCTC CGAACGTCAG GCAGCAGTGC GCGAACTGGC ACCGCTCGCC GATTGGCGAC AGGCGTTCCA GGCAGCGGGA ATGCCCTTCG AGACCACCAA AAGCAGTTAC AACCTGCTCC TGAAATGGAT TGAAGAACCG CCGCAATTCC TACCCGCGCG GCAACGGCTG AAAACGACCA GCATTGCACT CGCCGCCGCG GCCAGCCTGG CGCTGCTCTA TTTCCTGTTT TACTTCCTGT TCCATCTGCA AGAGCTTTCC TTCATGCATT TGCTGCCGCT GGGTATCAGT GTGGCCGTCA ATTCGGTTTA CCTGCGCAAA TTCAGGCCTG TGGCTGAGCA CATTATCCAA AGCACGCAGG CAAACATCGG CATTCTCGGT GCATACCAGT CCCTTATCGG CGTTGCCTGG GCTGAAAGTT TTACGGGAAA AAAACTGAGG GAAATACGCG CGGCGCTGTT CGAAAATGGC AAATCGGCTG CGTCGGATAT AGGTGCATTG AAGAAAAACC TTGAAATTTT CCAGCAAAAG GGCACGCGCA ATACAATTGG CAAAAACGCA TTTTACGGAA TGCTCAACAA TCTATGGCTG CTCGATGTGC ACCTCATACT GCGGACCGAA GGTTGGAAAT CCAGGAACAG TGTGCGCATT CGTCCCTGGA TTGCGGCCAT CAGCGAGCTG GAAGCGCTGG CCAGCCTCGC AGGCTTCGCC CACGCGAATC CCGGGTATCA GTACCCCGAA ATTACGACTG AGCCCTATCT CATTGATTTC CGGTCGGTTG GCCATCCTTT GTTAAACCAT TACAGGCGCG TCACCAACGA CTTCACGATG AGCGGCCGTG GTGCCACCAC GATGATCACC GGCTCCAATA TGGCCGGCAA GAGTACGTTC CTGCGCACCA TCGGCATTAA CCTCGTGCTG GCATTCGTGG GAGCGCCCTG CTGTGCGTCG CATGCCCGCG TTTCGCTCCT GCGCGTGTTT ACGAGCATGC GCACGCAGGA CAATCTCGAA GAATCCGTTT CCTCGTTTTA TGCCGAGCTG CGGCGCATCG AGCGGTTGCT GGAACTCGTG GGCCAGGGCG AACCGATCTT TTTCCTGCTC GATGAAATGT TCAAAGGCAC CAATTCGCAG GACCGTTTCC GCGGCGGCGT GTCGCTGATC CGCCAGCTGA GCGAACTCGA TGCATTCGGC ATCATTTCCA CGCACGATCT CGACCTGGCC CGCTTAGCTA CCGACATCCG CAATTTCAGC TTCAACAGCA CTATCGAGGA CGGACAGATT TCCTTCAACT ACCGGCTCAC ACCCGGTATT TGCACGGATT TCAATGCGAG TGAACTTATG AGACGCAGCG GCATCCGCAT TCTGCCGGAT GTATTGCCGG CCAGCTGA
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Protein sequence | MEETFKEKAR QYKVIAESLV PQLNSLSLAR LGVFLATGIL ILFFAANGWV IPVVGTAVAG AVLFMVILRR YDELSGAKRK AELLKQINED EILRAQHQLA SFPTGDAFLH RDQDYAADLD IFGHHSLFQL LNRTTTESAA RMLAHWLTSP ADRQTISERQ AAVRELAPLA DWRQAFQAAG MPFETTKSSY NLLLKWIEEP PQFLPARQRL KTTSIALAAA ASLALLYFLF YFLFHLQELS FMHLLPLGIS VAVNSVYLRK FRPVAEHIIQ STQANIGILG AYQSLIGVAW AESFTGKKLR EIRAALFENG KSAASDIGAL KKNLEIFQQK GTRNTIGKNA FYGMLNNLWL LDVHLILRTE GWKSRNSVRI RPWIAAISEL EALASLAGFA HANPGYQYPE ITTEPYLIDF RSVGHPLLNH YRRVTNDFTM SGRGATTMIT GSNMAGKSTF LRTIGINLVL AFVGAPCCAS HARVSLLRVF TSMRTQDNLE ESVSSFYAEL RRIERLLELV GQGEPIFFLL DEMFKGTNSQ DRFRGGVSLI RQLSELDAFG IISTHDLDLA RLATDIRNFS FNSTIEDGQI SFNYRLTPGI CTDFNASELM RRSGIRILPD VLPAS
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